UHGV-2182111

Genome information

Genome length 34,801 bps

CDS count 58

Completeness 97.25% (high-quality)

geNomad score 0.9634

Prediction confidence Confident

Genome information
Genome ID	UHGV-2182111
vOTU ID	vOTU-071728
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029814\|Ga0243410_100120\|provirus_17459_52259
BioSample	SAMEA2582132
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.25% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9634
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.69
Jumbo phage	No

Genome content
Genome length	34,801 bps
GC content	43.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	86.49%
Average CDS length	524.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2182111_1	KOfam	K14059	int; integrase	NA
UHGV-2182111_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2182111_1	UniRef90	UniRef90_A0A0X8VAG8	Phage integrase family protein	NA
UHGV-2182111_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-2182111_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2182111_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2182111_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2182111_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2182111_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2182111_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2182111_2	UniRef90	UniRef90_A0A645HG75	HicB-like domain-containing protein	NA
UHGV-2182111_2	eggNOG-mapper	397287.C807_02608	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2182111_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2182111_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2182111_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2182111_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2182111_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2182111_3	UniRef90	UniRef90_A0A5D0WVC1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-2182111_3	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2182111_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2182111_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2182111_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2182111_4	PHROG	phrog_1914	NA	unknown function
UHGV-2182111_4	UniRef90	UniRef90_UPI001960AE08	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2182111_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2182111_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2182111_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2182111_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2182111_5	UniRef90	UniRef90_R9N2D4	HTH cro/C1-type domain-containing protein	NA
UHGV-2182111_5	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-2182111_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2182111_5	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-2182111_6	UniRef90	UniRef90_A0A4P9C894	HTH cro/C1-type domain-containing protein	NA
UHGV-2182111_6	eggNOG-mapper	1235798.C817_04758	NA	NA
UHGV-2182111_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2182111_6	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-2182111_10	PHROG	phrog_750	NA	unknown function
UHGV-2182111_10	eggNOG-mapper	1158610.UC3_02381	NA	NA
UHGV-2182111_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2182111_12	UniRef90	UniRef90_UPI001BEBA312	helix-turn-helix domain-containing protein	NA
UHGV-2182111_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2182111_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2182111_13	Structural annotation	PF13744, MF_00535, NF010465, COG3655	NA	NA
UHGV-2182111_15	PHROG	phrog_24518	NA	unknown function
UHGV-2182111_17	PHROG	phrog_3777	NA	unknown function
UHGV-2182111_17	UniRef90	UniRef90_UPI0019617347	NA	NA
UHGV-2182111_17	eggNOG-mapper	445972.ANACOL_02807	NA	NA
UHGV-2182111_17	Pfam	PF12957	NA	DUF3846
UHGV-2182111_17	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2182111_17	Structural annotation	PF12957	NA	NA
UHGV-2182111_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2182111_18	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-2182111_18	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2182111_19	PHROG	phrog_7566	NA	unknown function
UHGV-2182111_19	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-2182111_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2182111_20	UniRef90	UniRef90_A0A173RHG7	PUA domain (Predicted RNA-binding domain)	NA
UHGV-2182111_20	eggNOG-mapper	476272.RUMHYD_03330	NA	NA
UHGV-2182111_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2182111_20	Structural annotation	PF01507, MF_03053, TIGR02057, COG1606	NA	NA
UHGV-2182111_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2182111_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2182111_26	UniRef90	UniRef90_UPI001961C9E0	single-stranded DNA-binding protein	NA
UHGV-2182111_26	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2182111_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2182111_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2182111_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2182111_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2182111_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2182111_27	PHROG	phrog_31049	NA	unknown function
UHGV-2182111_27	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-2182111_27	Structural annotation	TIGR01636	NA	NA
UHGV-2182111_28	Pfam	PF20505	NA	DUF6731
UHGV-2182111_28	Structural annotation	PF20505	NA	NA
UHGV-2182111_29	AcrCatalog	cluster_138565	NA	NA
UHGV-2182111_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2182111_30	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-2182111_30	eggNOG-mapper	908340.HMPREF9406_2583	HNH nucleases	NA
UHGV-2182111_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2182111_31	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2182111_31	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-2182111_31	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-2182111_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2182111_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2182111_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2182111_32	UniRef90	UniRef90_A0A3D1FL87	Terminase	NA
UHGV-2182111_32	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-2182111_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2182111_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2182111_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2182111_32	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2182111_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2182111_33	UniRef90	UniRef90_A0A8G1TPJ1	Phage portal protein	NA
UHGV-2182111_33	eggNOG-mapper	1235798.C817_04583	Phage portal protein, HK97 family	NA
UHGV-2182111_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2182111_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2182111_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2182111_33	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2182111_34	KOfam	K06904	NA	NA
UHGV-2182111_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2182111_34	UniRef90	UniRef90_A0A8G1TPN9	HK97 family phage prohead protease	NA
UHGV-2182111_34	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-2182111_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2182111_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2182111_34	COG	COG3740	Phage head maturation protease	NA
UHGV-2182111_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2182111_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-2182111_35	UniRef90	UniRef90_UPI001E346EE7	phage major capsid protein	NA
UHGV-2182111_35	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2182111_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2182111_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2182111_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2182111_36	PHROG	phrog_2550	NA	unknown function
UHGV-2182111_36	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-2182111_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2182111_37	PHROG	phrog_19734	NA	unknown function
UHGV-2182111_37	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-2182111_37	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-2182111_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2182111_38	PHROG	phrog_78	tail terminator	connector
UHGV-2182111_38	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-2182111_38	Structural annotation	PF05657	NA	NA
UHGV-2182111_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2182111_39	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-2182111_39	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-2182111_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2182111_39	Structural annotation	TIGR01725	NA	NA
UHGV-2182111_40	PHROG	phrog_88	major tail protein	tail
UHGV-2182111_40	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-2182111_40	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2182111_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2182111_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2182111_41	eggNOG-mapper	191610.CATYP_01040	NA	NA
UHGV-2182111_41	Structural annotation	PF11836	NA	NA
UHGV-2182111_42	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2182111_42	UniRef90	UniRef90_W3AIS5	Response regulator (CheY-like receiver, AAA-type ATPase, and DNA-binding domain-containing protein)	NA
UHGV-2182111_42	eggNOG-mapper	97139.C824_02817	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2182111_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2182111_42	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-2182111_43	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2182111_43	PHROG	phrog_23464	NA	unknown function
UHGV-2182111_43	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-2182111_43	COG	COG5412	Phage-related protein	NA
UHGV-2182111_43	Structural annotation	PF02050	NA	NA
UHGV-2182111_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2182111_44	UniRef90	UniRef90_A0A120MKD9	Phage tail protein	NA
UHGV-2182111_44	eggNOG-mapper	1540257.JQMW01000004_gene407	tail component	NA
UHGV-2182111_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2182111_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-2182111_44	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-2182111_45	PHROG	phrog_863	tail fiber assembly	tail
UHGV-2182111_45	UniRef90	UniRef90_A0A136WG25	BppU_N domain-containing protein	NA
UHGV-2182111_45	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-2182111_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2182111_45	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2182111_45	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2182111_45	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-2182111_47	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2182111_48	eggNOG-mapper	1121423.JONT01000035_gene912	NA	NA
UHGV-2182111_48	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2182111_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2182111_49	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-2182111_49	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-2182111_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2182111_49	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-2182111_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2182111_49	COG	COG4926	Phage-related protein	NA
UHGV-2182111_49	Structural annotation	PF14594, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-2182111_51	PHROG	phrog_27228	NA	unknown function
UHGV-2182111_51	eggNOG-mapper	428125.CLOLEP_01418	NA	NA
UHGV-2182111_52	PHROG	phrog_36029	NA	unknown function
UHGV-2182111_52	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-2182111_52	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-2182111_53	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2182111_53	UniRef90	UniRef90_R6Q814	NlpC/P60 domain-containing protein	NA
UHGV-2182111_53	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-2182111_53	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2182111_54	PHROG	phrog_13890	NA	unknown function
UHGV-2182111_54	UniRef90	UniRef90_W1I5S7	Uncultured bacterium extrachromosomal DNA RGI00099	NA
UHGV-2182111_54	eggNOG-mapper	411459.RUMOBE_01396	NA	NA
UHGV-2182111_54	Structural annotation	PF10723, NF010256, COG4877	NA	NA
UHGV-2182111_56	UniRef90	UniRef90_R5ABZ9	DNA-binding helix-turn-helix protein	NA
UHGV-2182111_56	eggNOG-mapper	97138.C820_01991	Helix-turn-helix XRE-family like proteins	NA
UHGV-2182111_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2182111_56	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA