UHGV-2182258

Genome information

Genome length 43,088 bps

CDS count 43

Completeness 77.89% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-2182258
vOTU ID	vOTU-026328
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029888\|Ga0245333_100240\|provirus_19280_62367
BioSample	SAMEA3449383
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.27
Jumbo phage	No

Genome content
Genome length	43,088 bps
GC content	38.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.32%
Average CDS length	938.65 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2182258_1	eggNOG-mapper	226186.BT_0854	NA	NA
UHGV-2182258_2	KOfam	K20331	toxA; toxoflavin synthase [EC:2.1.1.349]	NA
UHGV-2182258_2	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-2182258_2	UniRef90	UniRef90_A0A6N2WKE0	tRNA (Mo5U34)-methyltransferase	NA
UHGV-2182258_2	eggNOG-mapper	226186.BT_0853	NA	NA
UHGV-2182258_2	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-2182258_2	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2182258_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2182258_3	PHROG	phrog_1	integrase	integration and excision
UHGV-2182258_3	UniRef90	UniRef90_A0A5M5D4U9	Phage integrase SAM-like domain-containing protein	NA
UHGV-2182258_3	eggNOG-mapper	1347393.HG726021_gene359	Belongs to the 'phage' integrase family	NA
UHGV-2182258_3	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2182258_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2182258_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2182258_3	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-2182258_4	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-2182258_4	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-2182258_4	UniRef90	UniRef90_I9EJQ2	Beta sliding clamp	NA
UHGV-2182258_4	eggNOG-mapper	484018.BACPLE_00686	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-2182258_4	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-2182258_4	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-2182258_4	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-2182258_4	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-2182258_4	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-2182258_4	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-2182258_5	PHROG	phrog_7445	NA	unknown function
UHGV-2182258_5	UniRef90	UniRef90_UPI001C02E32F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2182258_5	eggNOG-mapper	484018.BACPLE_00685	PcfK-like protein	NA
UHGV-2182258_5	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2182258_5	Structural annotation	PF14058	NA	NA
UHGV-2182258_6	PHROG	phrog_8470	NA	unknown function
UHGV-2182258_6	UniRef90	UniRef90_UPI00189C6D95	PcfJ domain-containing protein	NA
UHGV-2182258_6	eggNOG-mapper	484018.BACPLE_00684	NA	NA
UHGV-2182258_6	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2182258_6	Structural annotation	PF14284	NA	NA
UHGV-2182258_7	PHROG	phrog_23776	NA	unknown function
UHGV-2182258_7	UniRef90	UniRef90_UPI001D0921D0	helix-turn-helix domain-containing protein	NA
UHGV-2182258_7	eggNOG-mapper	1347393.HG726021_gene366	DnaD domain protein	NA
UHGV-2182258_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2182258_7	Structural annotation	PF01978, MF_01819, NF040939, COG5625	NA	NA
UHGV-2182258_8	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2182258_8	UniRef90	UniRef90_A0A415M3J3	ATP-binding protein	NA
UHGV-2182258_8	eggNOG-mapper	1121097.JCM15093_3228	DNA-dependent DNA replication	NA
UHGV-2182258_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2182258_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2182258_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2182258_9	UniRef90	UniRef90_A0A415M3J1	Replicative DNA helicase	NA
UHGV-2182258_9	eggNOG-mapper	1077285.AGDG01000032_gene4386	Participates in initiation and elongation during chromosome replication	NA
UHGV-2182258_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2182258_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2182258_9	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2182258_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-2182258_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2182258_10	eggNOG-mapper	1121097.JCM15093_3229	NA	NA
UHGV-2182258_10	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-2182258_11	UniRef90	UniRef90_A0A139JTT5	KAP NTPase domain-containing protein	NA
UHGV-2182258_11	eggNOG-mapper	679937.Bcop_1525	KAP family P-loop domain	NA
UHGV-2182258_11	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-2182258_11	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-2182258_11	Structural annotation	PF07693, NF041923, COG4928	NA	NA
UHGV-2182258_12	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2182258_12	UniRef90	UniRef90_A0A1E9CD04	Terminase	NA
UHGV-2182258_12	eggNOG-mapper	484018.BACPLE_00673	transposase activity	NA
UHGV-2182258_12	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2182258_12	Structural annotation	PF07141	NA	NA
UHGV-2182258_13	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2182258_13	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-2182258_13	eggNOG-mapper	484018.BACPLE_00672	domain protein	NA
UHGV-2182258_13	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2182258_13	COG	COG5410	NA	NA
UHGV-2182258_13	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2182258_14	UniRef90	UniRef90_A0A385BUK5	HNH_5 domain-containing protein	NA
UHGV-2182258_14	eggNOG-mapper	655815.ZPR_3440	NA	NA
UHGV-2182258_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-2182258_15	UniRef90	UniRef90_A0A139KRB6	Phage portal protein, SPP1 family	NA
UHGV-2182258_15	eggNOG-mapper	484018.BACPLE_00670	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2182258_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2182258_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2182258_16	PHROG	phrog_35295	NA	unknown function
UHGV-2182258_16	UniRef90	UniRef90_A0A415M3M3	Gln_amidase domain-containing protein	NA
UHGV-2182258_16	eggNOG-mapper	484018.BACPLE_00669	NA	NA
UHGV-2182258_16	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-2182258_16	Structural annotation	PF06152	NA	NA
UHGV-2182258_18	eggNOG-mapper	484018.BACPLE_00667	NA	NA
UHGV-2182258_19	PHROG	phrog_20501	NA	unknown function
UHGV-2182258_19	eggNOG-mapper	484018.BACPLE_00666	NA	NA
UHGV-2182258_20	PHROG	phrog_29	major head protein	head and packaging
UHGV-2182258_20	UniRef90	UniRef90_A0A416VUG2	Major capsid protein E	NA
UHGV-2182258_20	eggNOG-mapper	484018.BACPLE_00665	Phage major capsid protein E	NA
UHGV-2182258_20	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2182258_20	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-2182258_21	eggNOG-mapper	484018.BACPLE_00664	NA	NA
UHGV-2182258_21	Structural annotation	PF20449	NA	NA
UHGV-2182258_22	eggNOG-mapper	484018.BACPLE_00663	NA	NA
UHGV-2182258_22	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2182258_23	PHROG	phrog_5377	NA	unknown function
UHGV-2182258_23	UniRef90	UniRef90_UPI00189E77B6	HK97 gp10 family phage protein	NA
UHGV-2182258_23	eggNOG-mapper	484018.BACPLE_00662	NA	NA
UHGV-2182258_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2182258_24	PHROG	phrog_5597	NA	unknown function
UHGV-2182258_24	eggNOG-mapper	484018.BACPLE_00661	NA	NA
UHGV-2182258_24	Structural annotation	PF09646, COG3167	NA	NA
UHGV-2182258_25	eggNOG-mapper	484018.BACPLE_00660	NA	NA
UHGV-2182258_25	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2182258_26	eggNOG-mapper	484018.BACPLE_00659	NA	NA
UHGV-2182258_28	PHROG	phrog_32115	NA	unknown function
UHGV-2182258_28	UniRef90	UniRef90_A0A7J5NXU4	Phage tail tape measure protein	NA
UHGV-2182258_28	eggNOG-mapper	484018.BACPLE_00656	Phage-related minor tail protein	NA
UHGV-2182258_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2182258_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2182258_28	COG	COG1511	NA	NA
UHGV-2182258_28	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2182258_29	PHROG	phrog_6305	tail protein	tail
UHGV-2182258_29	eggNOG-mapper	1122971.BAME01000006_gene891	NA	NA
UHGV-2182258_29	Structural annotation	PF05709, PF20195, TIGR01633, COG4722	NA	NA
UHGV-2182258_30	PHROG	phrog_17134	NA	unknown function
UHGV-2182258_30	eggNOG-mapper	1041808.G1EDU1_9CAUD	NA	NA
UHGV-2182258_31	UniRef90	UniRef90_A0A7J5NXT8	NA	NA
UHGV-2182258_31	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-2182258_31	Pfam	PF14301	NA	DUF4376
UHGV-2182258_31	Structural annotation	PF14301	NA	NA
UHGV-2182258_32	UniRef90	UniRef90_A0A374WEP0	NA	NA
UHGV-2182258_32	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-2182258_32	Pfam	PF14301	NA	DUF4376
UHGV-2182258_32	Structural annotation	PF14301	NA	NA
UHGV-2182258_33	Structural annotation	PF18463, NF012201	NA	NA
UHGV-2182258_34	PHROG	phrog_4209	tail fiber protein	tail
UHGV-2182258_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2182258_34	Structural annotation	PF18463, NF012201	NA	NA
UHGV-2182258_35	PHROG	phrog_22546	NA	unknown function
UHGV-2182258_35	eggNOG-mapper	470145.BACCOP_01120	Phage minor structural protein	NA
UHGV-2182258_35	COG	COG4926	Phage-related protein	NA
UHGV-2182258_35	Structural annotation	PF14594, PF03623, PF01441, TIGR01665, COG4379	NA	NA
UHGV-2182258_36	eggNOG-mapper	484018.BACPLE_00652	NA	NA
UHGV-2182258_37	Structural annotation	NF007539	NA	NA
UHGV-2182258_38	PHROG	phrog_15037	NA	unknown function
UHGV-2182258_38	UniRef90	UniRef90_UPI001EDCBA4D	phage holin family protein	NA
UHGV-2182258_38	eggNOG-mapper	1347393.HG726021_gene389	NA	NA
UHGV-2182258_38	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2182258_38	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2182258_39	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2182258_39	PHROG	phrog_822	amidase	lysis
UHGV-2182258_39	UniRef90	UniRef90_UPI001F2C48FF	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2182258_39	eggNOG-mapper	657309.BXY_05110	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2182258_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2182258_39	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2182258_39	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-2182258_40	PHROG	phrog_35356	NA	unknown function
UHGV-2182258_40	UniRef90	UniRef90_A0A849YNZ9	Histidine kinase	NA
UHGV-2182258_40	eggNOG-mapper	411476.BACOVA_03952	NA	NA
UHGV-2182258_42	PHROG	phrog_19951	NA	unknown function
UHGV-2182258_42	UniRef90	UniRef90_A0A849YLQ6	Bacteriophage abortive infection AbiH family protein	NA
UHGV-2182258_42	eggNOG-mapper	762903.Pedsa_1544	Bacteriophage abortive infection AbiH	NA
UHGV-2182258_42	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-2182258_42	Structural annotation	PF14253, NF001755	NA	NA
UHGV-2182258_43	eggNOG-mapper	1268240.ATFI01000012_gene1440	SOS response associated peptidase (SRAP)	NA
UHGV-2182258_43	COG	COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	NA