UHGV-2182306

Genome information

Genome length 33,883 bps

CDS count 50

Completeness 95.87% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-2182306
vOTU ID	vOTU-010248
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030030\|Ga0245278_100648
BioSample	SAMEA3449329
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.82
Jumbo phage	No

Genome content
Genome length	33,883 bps
GC content	44.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.14%
Average CDS length	630.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2182306_1	PHROG	phrog_6600	NA	unknown function
UHGV-2182306_1	UniRef90	UniRef90_A0A374JQK3	HIRAN domain-containing protein	NA
UHGV-2182306_1	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-2182306_1	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-2182306_1	Structural annotation	PF08797	NA	NA
UHGV-2182306_2	UniRef90	UniRef90_A0A415MTA4	XRE family transcriptional regulator	NA
UHGV-2182306_2	eggNOG-mapper	1226325.HMPREF1548_06747	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2182306_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2182306_5	UniRef90	UniRef90_A0A374JR06	DNA-binding protein	NA
UHGV-2182306_5	eggNOG-mapper	1226325.HMPREF1548_06746	NA	NA
UHGV-2182306_8	Structural annotation	PF13058	NA	NA
UHGV-2182306_10	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-2182306_12	PHROG	phrog_20014	NA	unknown function
UHGV-2182306_12	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-2182306_13	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2182306_13	UniRef90	UniRef90_A0A7X5D2G2	Radical SAM protein	NA
UHGV-2182306_13	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-2182306_13	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2182306_13	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-2182306_14	PHROG	phrog_25385	NA	unknown function
UHGV-2182306_14	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-2182306_16	PHROG	phrog_24386	NA	unknown function
UHGV-2182306_16	eggNOG-mapper	411468.CLOSCI_00562	COG NOG28949 non supervised orthologous group	NA
UHGV-2182306_16	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-2182306_16	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-2182306_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2182306_19	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-2182306_19	Structural annotation	PF21578	NA	NA
UHGV-2182306_20	PHROG	phrog_824	NA	unknown function
UHGV-2182306_20	UniRef90	UniRef90_A0A374JR68	VRR-NUC domain-containing protein	NA
UHGV-2182306_20	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-2182306_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2182306_21	eggNOG-mapper	1235800.C819_02253	NA	NA
UHGV-2182306_22	eggNOG-mapper	411468.CLOSCI_00554	NA	NA
UHGV-2182306_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2182306_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2182306_23	UniRef90	UniRef90_A0A374JQS6	HNH endonuclease	NA
UHGV-2182306_23	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-2182306_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2182306_24	PHROG	phrog_1066	NA	unknown function
UHGV-2182306_24	eggNOG-mapper	411902.CLOBOL_03883	NA	NA
UHGV-2182306_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2182306_25	UniRef90	UniRef90_A0A374JP15	Terminase large subunit	NA
UHGV-2182306_25	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-2182306_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2182306_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2182306_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2182306_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2182306_26	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-2182306_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2182306_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2182306_27	UniRef90	UniRef90_A0A374JP76	Phage portal protein	NA
UHGV-2182306_27	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-2182306_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2182306_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2182306_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2182306_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2182306_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2182306_28	UniRef90	UniRef90_A0A374JQH6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2182306_28	eggNOG-mapper	411468.CLOSCI_00549	COG COG0740 Protease subunit of ATP-dependent Clp proteases	NA
UHGV-2182306_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2182306_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2182306_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2182306_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-2182306_29	UniRef90	UniRef90_A0A374JNW0	Phage major capsid protein	NA
UHGV-2182306_29	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-2182306_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2182306_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2182306_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2182306_30	PHROG	phrog_5223	neck protein	connector
UHGV-2182306_30	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-2182306_30	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-2182306_31	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2182306_31	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-2182306_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2182306_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2182306_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2182306_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2182306_32	UniRef90	UniRef90_A0A374JNZ6	HK97 gp10 family phage protein	NA
UHGV-2182306_32	eggNOG-mapper	411902.CLOBOL_03876	COG NOG18351 non supervised orthologous group	NA
UHGV-2182306_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2182306_33	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-2182306_33	Structural annotation	PF20765	NA	NA
UHGV-2182306_34	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2182306_34	eggNOG-mapper	411468.CLOSCI_00543	NA	NA
UHGV-2182306_34	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2182306_35	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-2182306_35	Structural annotation	PF17388	NA	NA
UHGV-2182306_36	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2182306_36	UniRef90	UniRef90_A0A374JNY3	PhageMin_Tail domain-containing protein	NA
UHGV-2182306_36	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-2182306_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2182306_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2182306_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2182306_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2182306_37	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-2182306_37	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-2182306_37	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2182306_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2182306_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2182306_38	UniRef90	UniRef90_A0A374JQG5	Prophage_tail domain-containing protein	NA
UHGV-2182306_38	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2182306_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2182306_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2182306_38	COG	COG4926	Phage-related protein	NA
UHGV-2182306_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2182306_40	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2182306_41	eggNOG-mapper	1120933.ATUY01000004_gene1007	NA	NA
UHGV-2182306_42	PHROG	phrog_17147	NA	unknown function
UHGV-2182306_42	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-2182306_42	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-2182306_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2182306_42	Structural annotation	PF10651	NA	NA
UHGV-2182306_43	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2182306_43	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2182306_43	UniRef90	UniRef90_A0A374JNY7	Reverse transcriptase domain-containing protein	NA
UHGV-2182306_43	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2182306_43	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2182306_43	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2182306_43	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2182306_43	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2182306_46	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-2182306_47	PHROG	phrog_263	holin	lysis
UHGV-2182306_47	UniRef90	UniRef90_R6GD40	Holin SPP1 family	NA
UHGV-2182306_47	eggNOG-mapper	764291.STRUR_2085	SPP1 phage holin	NA
UHGV-2182306_47	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2182306_47	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2182306_47	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2182306_48	KOfam	K07273	acm; lysozyme	NA
UHGV-2182306_48	PHROG	phrog_291	endolysin	lysis
UHGV-2182306_48	UniRef90	UniRef90_A0A374JNX4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2182306_48	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-2182306_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2182306_48	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2182306_48	Pfam	PF01476	LysM domain	LysM
UHGV-2182306_48	COG	COG1388	LysM repeat	NA
UHGV-2182306_48	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2182306_49	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-2182306_49	UniRef90	UniRef90_R6GD17	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	NA
UHGV-2182306_49	eggNOG-mapper	33035.JPJF01000050_gene855	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-2182306_49	Pfam	PF00919	NA	UPF0004
UHGV-2182306_49	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2182306_49	Pfam	PF01938	TRAM domain	TRAM
UHGV-2182306_49	NCBIFam	TIGR01574.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA
UHGV-2182306_49	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-2182306_49	HAMAP	MF_01864	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	NA
UHGV-2182306_49	Structural annotation	PF00919, PF20903, MF_01864, TIGR01574, COG0621	NA	NA
UHGV-2182306_50	eggNOG-mapper	1256908.HMPREF0373_00775	Mate efflux family protein	NA
UHGV-2182306_50	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA