UHGV-2182373

Genome information

Genome length 56,886 bps

CDS count 75

Completeness 93.77% (high-quality)

geNomad score 0.9607

Prediction confidence Confident

Genome information
Genome ID	UHGV-2182373
vOTU ID	vOTU-062952
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029874\|Ga0245322_100421
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9607
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.53
Jumbo phage	No

Genome content
Genome length	56,886 bps
GC content	48.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.39%
Average CDS length	688.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2182373_1	PHROG	phrog_4259	NA	unknown function
UHGV-2182373_1	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-2182373_1	eggNOG-mapper	691965.D4P7B9_9CAUD	NA	NA
UHGV-2182373_2	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2182373_2	UniRef90	UniRef90_A0A649V6Q6	HNH endonuclease	NA
UHGV-2182373_2	eggNOG-mapper	411460.RUMTOR_01352	NA	NA
UHGV-2182373_3	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-2182373_3	UniRef90	UniRef90_A0A6B9JBW4	Head-to-tail adaptor	NA
UHGV-2182373_3	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-2182373_4	PHROG	phrog_7021	NA	unknown function
UHGV-2182373_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2182373_5	UniRef90	UniRef90_A0A7X5ECI8	Terminase	NA
UHGV-2182373_5	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-2182373_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2182373_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2182373_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2182373_5	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2182373_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-2182373_9	UniRef90	UniRef90_A0A1Y4MMD6	Phage portal protein	NA
UHGV-2182373_9	eggNOG-mapper	742733.HMPREF9469_05032	Phage portal protein	NA
UHGV-2182373_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2182373_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2182373_10	KOfam	K06904	NA	NA
UHGV-2182373_10	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-2182373_10	UniRef90	UniRef90_UPI001C27C418	phage major capsid protein	NA
UHGV-2182373_10	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-2182373_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2182373_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2182373_10	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-2182373_12	PHROG	phrog_4270	NA	unknown function
UHGV-2182373_12	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-2182373_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2182373_13	UniRef90	UniRef90_A0A7T0M227	Tail terminator	NA
UHGV-2182373_13	eggNOG-mapper	665956.HMPREF1032_00678	NA	NA
UHGV-2182373_13	Structural annotation	PF20765	NA	NA
UHGV-2182373_14	PHROG	phrog_2645	major tail protein	tail
UHGV-2182373_14	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-2182373_14	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-2182373_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2182373_15	PHROG	phrog_4282	NA	unknown function
UHGV-2182373_15	eggNOG-mapper	428125.CLOLEP_01416	NA	NA
UHGV-2182373_16	PHROG	phrog_4338	NA	unknown function
UHGV-2182373_16	eggNOG-mapper	1537917.JU82_06570	NA	NA
UHGV-2182373_17	UniRef90	UniRef90_A0A7X4ZPC4	HK97 gp10 family phage protein	NA
UHGV-2182373_17	eggNOG-mapper	742740.HMPREF9474_02263	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2182373_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2182373_17	Structural annotation	TIGR01725	NA	NA
UHGV-2182373_18	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-2182373_18	UniRef90	UniRef90_UPI0018A04E48	tape measure protein	NA
UHGV-2182373_18	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-2182373_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2182373_18	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2182373_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2182373_18	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2182373_20	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2182373_20	UniRef90	UniRef90_A0A5M9HU25	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2182373_20	eggNOG-mapper	1121451.DESAM_21762	HicB family	NA
UHGV-2182373_20	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2182373_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2182373_21	UniRef90	UniRef90_A0A1W1Z4I2	Phage-related protein	NA
UHGV-2182373_21	eggNOG-mapper	632245.CLP_1659	tail component	NA
UHGV-2182373_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-2182373_21	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2182373_22	PHROG	phrog_21973	tail protein	tail
UHGV-2182373_22	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-2182373_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2182373_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2182373_23	PHROG	phrog_372	tail protein	tail
UHGV-2182373_23	eggNOG-mapper	1231377.C426_1940	NA	NA
UHGV-2182373_24	PHROG	phrog_14030	NA	unknown function
UHGV-2182373_24	UniRef90	UniRef90_G5FC83	SH3b domain-containing protein	NA
UHGV-2182373_24	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-2182373_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2182373_24	Structural annotation	PF01471, PF18342, TIGR02869, TIGR04457, COG4991	NA	NA
UHGV-2182373_25	PHROG	phrog_937	hemolysin	other
UHGV-2182373_26	PHROG	phrog_13239	NA	unknown function
UHGV-2182373_26	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-2182373_26	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-2182373_26	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2182373_26	Structural annotation	PF16938	NA	NA
UHGV-2182373_27	PHROG	phrog_32444	NA	unknown function
UHGV-2182373_27	eggNOG-mapper	478749.BRYFOR_08525	NA	NA
UHGV-2182373_27	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-2182373_27	Structural annotation	PF21435, NF011786	NA	NA
UHGV-2182373_29	KOfam	K14059	int; integrase	NA
UHGV-2182373_29	PHROG	phrog_1	integrase	integration and excision
UHGV-2182373_29	UniRef90	UniRef90_A0A7X7CNB6	Site-specific integrase	NA
UHGV-2182373_29	eggNOG-mapper	1304866.K413DRAFT_1893	Belongs to the 'phage' integrase family	NA
UHGV-2182373_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2182373_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2182373_29	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-2182373_30	PHROG	phrog_11237	NA	unknown function
UHGV-2182373_30	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-2182373_32	PHROG	phrog_15309	NA	unknown function
UHGV-2182373_32	eggNOG-mapper	742733.HMPREF9469_05090	NA	NA
UHGV-2182373_33	PHROG	phrog_15866	NA	unknown function
UHGV-2182373_33	eggNOG-mapper	428125.CLOLEP_01351	NA	NA
UHGV-2182373_34	PHROG	phrog_2152	NA	unknown function
UHGV-2182373_34	UniRef90	UniRef90_UPI001956236B	NA	NA
UHGV-2182373_34	eggNOG-mapper	665950.HMPREF1025_01940	NA	NA
UHGV-2182373_34	Pfam	PF19880	NA	DUF6353
UHGV-2182373_34	Structural annotation	PF19880	NA	NA
UHGV-2182373_36	PHROG	phrog_2152	NA	unknown function
UHGV-2182373_36	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-2182373_36	eggNOG-mapper	411460.RUMTOR_02024	NA	NA
UHGV-2182373_36	Pfam	PF19880	NA	DUF6353
UHGV-2182373_36	Structural annotation	PF19880	NA	NA
UHGV-2182373_38	PHROG	phrog_4079	NA	unknown function
UHGV-2182373_38	eggNOG-mapper	742733.HMPREF9469_05076	NA	NA
UHGV-2182373_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-2182373_40	UniRef90	UniRef90_A0A173Z9D7	NA	NA
UHGV-2182373_40	eggNOG-mapper	742740.HMPREF9474_02311	NA	NA
UHGV-2182373_40	Pfam	PF11753	NA	DUF3310
UHGV-2182373_41	PHROG	phrog_2152	NA	unknown function
UHGV-2182373_41	UniRef90	UniRef90_UPI001D085778	NA	NA
UHGV-2182373_41	eggNOG-mapper	411460.RUMTOR_02029	NA	NA
UHGV-2182373_41	Pfam	PF19880	NA	DUF6353
UHGV-2182373_41	Structural annotation	PF19880	NA	NA
UHGV-2182373_43	PHROG	phrog_14968	NA	unknown function
UHGV-2182373_43	UniRef90	UniRef90_A0A1Y4MRK1	Histidine kinase	NA
UHGV-2182373_43	eggNOG-mapper	428125.CLOLEP_01370	NA	NA
UHGV-2182373_45	PHROG	phrog_4695	NA	unknown function
UHGV-2182373_45	UniRef90	UniRef90_UPI001D08D232	YtxH domain-containing protein	NA
UHGV-2182373_45	eggNOG-mapper	742740.HMPREF9474_02307	NA	NA
UHGV-2182373_47	PHROG	phrog_4678	NA	unknown function
UHGV-2182373_47	eggNOG-mapper	665950.HMPREF1025_01954	NA	NA
UHGV-2182373_49	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2182373_49	UniRef90	UniRef90_A0A7X5IUT2	SF3 helicase domain-containing protein	NA
UHGV-2182373_49	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-2182373_49	Pfam	PF19263	NA	DUF5906
UHGV-2182373_49	Structural annotation	PF05272, PF09250, MF_00016, NF011296, COG3378	NA	NA
UHGV-2182373_51	PHROG	phrog_19852	NA	unknown function
UHGV-2182373_51	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-2182373_53	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-2182373_53	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2182373_53	UniRef90	UniRef90_A0A6G6Y006	DNA-directed DNA polymerase	NA
UHGV-2182373_53	eggNOG-mapper	411460.RUMTOR_02036	NA	NA
UHGV-2182373_53	Structural annotation	PF00136, MF_04100, NF004418, COG0417	NA	NA
UHGV-2182373_56	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2182373_56	eggNOG-mapper	428125.CLOLEP_01377	NA	NA
UHGV-2182373_56	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-2182373_57	PHROG	phrog_7024	NA	unknown function
UHGV-2182373_58	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2182373_58	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-2182373_58	eggNOG-mapper	665950.HMPREF1025_01961	Helicase conserved C-terminal domain	NA
UHGV-2182373_58	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2182373_58	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-2182373_61	eggNOG-mapper	552811.Dehly_1183	NA	NA
UHGV-2182373_68	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-2182373_68	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-2182373_68	UniRef90	UniRef90_UPI001C3E9F26	FAD-dependent thymidylate synthase	NA
UHGV-2182373_68	eggNOG-mapper	665950.HMPREF1025_01363	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-2182373_68	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-2182373_68	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-2182373_68	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-2182373_68	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2182373_70	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-2182373_70	UniRef90	UniRef90_A0A1M7ETX2	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2182373_70	eggNOG-mapper	665956.HMPREF1032_00660	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2182373_70	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2182373_70	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2182373_70	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-2182373_74	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-2182373_74	Structural annotation	PF01870, COG1591	NA	NA
UHGV-2182373_75	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2182373_75	UniRef90	UniRef90_UPI001EDCD528	helix-turn-helix domain-containing protein	NA
UHGV-2182373_75	eggNOG-mapper	742733.HMPREF9469_05039	NA	NA