UHGV-2182683

Genome information

Genome length 40,852 bps

CDS count 75

Completeness 99.34% (high-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-2182683
vOTU ID	vOTU-071443
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029873\|Ga0245321_100125\|provirus_120288_161139
BioSample	SAMEA3449371
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.6
Jumbo phage	No

Genome content
Genome length	40,852 bps
GC content	53.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	91.58%
Average CDS length	503.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2182683_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2182683_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2182683_1	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-2182683_1	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2182683_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2182683_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2182683_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2182683_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2182683_2	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-2182683_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2182683_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2182683_2	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-2182683_6	UniRef90	UniRef90_R5HIC1	Helix-turn-helix domain protein	NA
UHGV-2182683_6	Structural annotation	NF007257, COG1396	NA	NA
UHGV-2182683_7	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-2182683_7	eggNOG-mapper	1514668.JOOA01000002_gene1643	NA	NA
UHGV-2182683_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2182683_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2182683_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2182683_10	PHROG	phrog_22529	NA	unknown function
UHGV-2182683_10	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-2182683_10	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-2182683_10	Pfam	PF06725	3D domain	3D
UHGV-2182683_10	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2182683_10	Structural annotation	COG3584	NA	NA
UHGV-2182683_12	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-2182683_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2182683_12	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-2182683_14	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-2182683_14	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-2182683_14	Pfam	PF06378	NA	DUF1071
UHGV-2182683_14	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-2182683_15	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-2182683_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2182683_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2182683_16	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2182683_16	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2182683_16	Structural annotation	PF05772	NA	NA
UHGV-2182683_17	PHROG	phrog_7566	NA	unknown function
UHGV-2182683_17	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-2182683_17	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-2182683_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2182683_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2182683_18	UniRef90	UniRef90_A0A1Q6R0X3	Single-stranded DNA-binding protein	NA
UHGV-2182683_18	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-2182683_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2182683_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2182683_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2182683_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2182683_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2182683_21	PHROG	phrog_15768	NA	unknown function
UHGV-2182683_21	UniRef90	UniRef90_UPI0019563B2C	NA	NA
UHGV-2182683_21	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-2182683_21	Pfam	PF19808	NA	DUF6291
UHGV-2182683_21	Structural annotation	PF19808	NA	NA
UHGV-2182683_22	Structural annotation	PF11417	NA	NA
UHGV-2182683_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2182683_24	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-2182683_24	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-2182683_24	Pfam	PF06356	NA	DUF1064
UHGV-2182683_24	Structural annotation	PF06356	NA	NA
UHGV-2182683_26	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2182683_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2182683_26	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-2182683_26	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2182683_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2182683_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2182683_26	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2182683_28	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-2182683_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2182683_29	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-2182683_29	UniRef90	UniRef90_D4K5C7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2182683_29	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2182683_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2182683_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2182683_31	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2182683_31	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-2182683_31	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2182683_34	PHROG	phrog_38832	NA	unknown function
UHGV-2182683_34	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-2182683_34	Structural annotation	PF18300	NA	NA
UHGV-2182683_35	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-2182683_35	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2182683_37	UniRef90	UniRef90_UPI001D08B1AD	Lar family restriction alleviation protein	NA
UHGV-2182683_39	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-2182683_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2182683_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2182683_40	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-2182683_40	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-2182683_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2182683_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2182683_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2182683_42	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2182683_42	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2182683_42	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-2182683_42	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-2182683_42	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2182683_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2182683_42	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2182683_42	COG	COG0863	DNA modification methylase	NA
UHGV-2182683_42	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2182683_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2182683_44	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2182683_44	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-2182683_44	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-2182683_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2182683_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2182683_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-2182683_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2182683_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-2182683_45	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-2182683_45	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-2182683_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2182683_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2182683_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2182683_46	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-2182683_46	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-2182683_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2182683_46	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-2182683_46	COG	COG2369	NA	NA
UHGV-2182683_46	Structural annotation	PF06152	NA	NA
UHGV-2182683_47	Structural annotation	PF06810	NA	NA
UHGV-2182683_48	PHROG	phrog_544	major head protein	head and packaging
UHGV-2182683_48	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-2182683_48	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-2182683_48	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2182683_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2182683_49	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-2182683_50	PHROG	phrog_3366	NA	unknown function
UHGV-2182683_50	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-2182683_50	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2182683_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2182683_51	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-2182683_51	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-2182683_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2182683_51	Structural annotation	PF11114	NA	NA
UHGV-2182683_52	PHROG	phrog_3266	tail completion	connector
UHGV-2182683_52	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-2182683_52	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-2182683_52	Structural annotation	PF12691	NA	NA
UHGV-2182683_53	PHROG	phrog_3099	NA	unknown function
UHGV-2182683_53	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-2182683_53	Structural annotation	TIGR02126	NA	NA
UHGV-2182683_54	PHROG	phrog_11299	NA	unknown function
UHGV-2182683_54	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-2182683_54	Structural annotation	PF10666	NA	NA
UHGV-2182683_55	PHROG	phrog_706	NA	unknown function
UHGV-2182683_55	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-2182683_55	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2182683_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2182683_55	Structural annotation	PF06854	NA	NA
UHGV-2182683_56	PHROG	phrog_806	NA	unknown function
UHGV-2182683_56	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-2182683_56	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-2182683_56	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2182683_56	Pfam	PF11611	NA	DUF4352
UHGV-2182683_56	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-2182683_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2182683_57	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2182683_57	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2182683_57	COG	COG1511	NA	NA
UHGV-2182683_57	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-2182683_58	PHROG	phrog_1194	NA	unknown function
UHGV-2182683_58	eggNOG-mapper	60520.HR47_13415	NA	NA
UHGV-2182683_58	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-2182683_59	PHROG	phrog_22212	NA	unknown function
UHGV-2182683_59	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-2182683_59	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-2182683_60	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-2182683_60	Structural annotation	NF041249, COG4379	NA	NA
UHGV-2182683_61	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-2182683_61	Structural annotation	PF07238	NA	NA
UHGV-2182683_63	PHROG	phrog_38044	NA	unknown function
UHGV-2182683_63	eggNOG-mapper	1139219.I569_01368	Phage minor structural protein	NA
UHGV-2182683_63	COG	COG4926	Phage-related protein	NA
UHGV-2182683_63	Structural annotation	PF19079	NA	NA
UHGV-2182683_64	PHROG	phrog_4105	NA	unknown function
UHGV-2182683_64	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-2182683_64	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-2182683_65	PHROG	phrog_881	holin	lysis
UHGV-2182683_65	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-2182683_65	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-2182683_65	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2182683_65	Structural annotation	PF16938	NA	NA
UHGV-2182683_66	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2182683_66	PHROG	phrog_1493	endolysin	lysis
UHGV-2182683_66	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-2182683_66	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2182683_66	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2182683_66	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2182683_66	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2182683_66	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860, COG3409	NA	NA
UHGV-2182683_69	PHROG	phrog_3754	NA	unknown function
UHGV-2182683_69	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-2182683_70	PHROG	phrog_21718	NA	unknown function
UHGV-2182683_70	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2182683_71	PHROG	phrog_22984	NA	unknown function
UHGV-2182683_72	PHROG	phrog_16490	NA	unknown function
UHGV-2182683_72	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2182683_73	PHROG	phrog_20016	NA	unknown function
UHGV-2182683_73	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2182683_73	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2182683_73	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2182683_74	Structural annotation	PF12510	NA	NA
UHGV-2182683_75	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA