UHGV-2183150

Genome information

Genome length 38,864 bps

CDS count 57

Completeness 96.13% (high-quality)

geNomad score 0.9296

Prediction confidence Confident

Genome information
Genome ID	UHGV-2183150
vOTU ID	vOTU-008507
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029815\|Ga0244882_1000090\|provirus_67440_106303
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9296
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.7
Jumbo phage	No

Genome content
Genome length	38,864 bps
GC content	48.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.11%
Average CDS length	639.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2183150_1	KOfam	K14059	int; integrase	NA
UHGV-2183150_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2183150_1	UniRef90	UniRef90_D9Y6B8	Arm-DNA-bind_3 domain-containing protein	NA
UHGV-2183150_1	eggNOG-mapper	469610.HMPREF0189_01073	DNA integration	NA
UHGV-2183150_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-2183150_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2183150_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2183150_3	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-2183150_3	Pfam	PF10097	NA	DUF2335
UHGV-2183150_4	eggNOG-mapper	543913.D521_0440	DNA restriction-modification system	NA
UHGV-2183150_4	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2183150_4	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-2183150_4	Structural annotation	PF02384, MF_01872, TIGR02987, COG0286	NA	NA
UHGV-2183150_5	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-2183150_5	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-2183150_5	UniRef90	UniRef90_D9Y6B9	Transcriptional regulator, AlpA family	NA
UHGV-2183150_5	eggNOG-mapper	743974.MBO_05697	Transcriptional regulator	NA
UHGV-2183150_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2183150_5	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2183150_5	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-2183150_6	PHROG	phrog_236	nucleotide kinase	other
UHGV-2183150_6	eggNOG-mapper	742823.HMPREF9465_01256	NA	NA
UHGV-2183150_6	Pfam	PF11753	NA	DUF3310
UHGV-2183150_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2183150_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2183150_7	UniRef90	UniRef90_A0A3D4G7A5	Single-stranded DNA-binding protein	NA
UHGV-2183150_7	eggNOG-mapper	316067.Geob_3793	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2183150_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2183150_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2183150_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2183150_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2183150_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2183150_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2183150_14	UniRef90	UniRef90_A0A3D3SJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-2183150_14	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-2183150_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183150_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2183150_14	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-2183150_15	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-2183150_15	UniRef90	UniRef90_UPI0009B85759	Cro/CI family transcriptional regulator	NA
UHGV-2183150_15	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-2183150_22	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2183150_22	PHROG	phrog_2249	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2183150_22	UniRef90	UniRef90_A0A6L6YKY2	NA	NA
UHGV-2183150_22	eggNOG-mapper	765910.MARPU_09580	Phage plasmid primase P4 family	NA
UHGV-2183150_22	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-2183150_22	Pfam	PF19263	NA	DUF5906
UHGV-2183150_22	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2183150_22	Structural annotation	PF05272, PF03288, MF_04000, NF011296, TIGR00646, COG4643, COG3378	NA	NA
UHGV-2183150_23	Structural annotation	PF08281, MF_00245, NF007225, COG1595	NA	NA
UHGV-2183150_26	eggNOG-mapper	879212.DespoDRAFT_00825	NA	NA
UHGV-2183150_26	PADLOC	KwaB_00001	NA	Kiwa
UHGV-2183150_26	Structural annotation	PF16162, NF041623	NA	NA
UHGV-2183150_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2183150_27	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2183150_27	UniRef90	UniRef90_A0A3D3SJH3	HNH endonuclease	NA
UHGV-2183150_27	eggNOG-mapper	1501230.ET33_21195	HNH nucleases	NA
UHGV-2183150_27	AcrCatalog	cluster_19695	NA	NA
UHGV-2183150_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2183150_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2183150_27	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2183150_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2183150_28	UniRef90	UniRef90_A0A2Z6GBX9	Terminase, small subunit	NA
UHGV-2183150_28	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-2183150_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2183150_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2183150_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2183150_29	UniRef90	UniRef90_A0A6L6YIT6	Terminase large subunit	NA
UHGV-2183150_29	eggNOG-mapper	1485544.JQKP01000008_gene1675	Terminase	NA
UHGV-2183150_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2183150_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2183150_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2183150_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2183150_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2183150_30	UniRef90	UniRef90_A0A6L6YIJ9	Phage portal protein	NA
UHGV-2183150_30	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-2183150_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2183150_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2183150_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2183150_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2183150_31	KOfam	K06904	NA	NA
UHGV-2183150_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2183150_31	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-2183150_31	eggNOG-mapper	1147158.K7PKL4_9CAUD	peptidase activity	NA
UHGV-2183150_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2183150_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2183150_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2183150_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-2183150_32	UniRef90	UniRef90_A0A6L6YL65	Phage major capsid protein	NA
UHGV-2183150_32	eggNOG-mapper	279238.Saro_0649	capsid protein	NA
UHGV-2183150_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2183150_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2183150_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2183150_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2183150_33	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2183150_33	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-2183150_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2183150_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2183150_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2183150_34	PHROG	phrog_25	head closure Hc1	connector
UHGV-2183150_34	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-2183150_34	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-2183150_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2183150_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2183150_35	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-2183150_35	eggNOG-mapper	1407493.U5P416_9CAUD	NA	NA
UHGV-2183150_35	Structural annotation	TIGR01725	NA	NA
UHGV-2183150_36	PHROG	phrog_209	portal protein	head and packaging
UHGV-2183150_36	UniRef90	UniRef90_A0A087KRM1	Putative transposon protein	NA
UHGV-2183150_36	eggNOG-mapper	273526.SMDB11_2602	NA	NA
UHGV-2183150_36	Structural annotation	PF09646	NA	NA
UHGV-2183150_37	PHROG	phrog_165	tail sheath	tail
UHGV-2183150_37	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-2183150_37	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-2183150_37	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2183150_37	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2183150_37	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-2183150_37	Structural annotation	PF10758, COG4386	NA	NA
UHGV-2183150_38	PHROG	phrog_185	tail tube protein	tail
UHGV-2183150_38	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-2183150_38	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-2183150_38	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-2183150_38	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-2183150_39	PHROG	phrog_166	tail protein	tail
UHGV-2183150_39	UniRef90	UniRef90_UPI0005365165	phage tail assembly protein	NA
UHGV-2183150_39	eggNOG-mapper	29486.NJ56_17685	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-2183150_39	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-2183150_39	Structural annotation	PF10109, COG4518	NA	NA
UHGV-2183150_41	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-2183150_41	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-2183150_41	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-2183150_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2183150_41	COG	COG5412	Phage-related protein	NA
UHGV-2183150_41	Structural annotation	TIGR01760	NA	NA
UHGV-2183150_42	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-2183150_42	UniRef90	UniRef90_A0A6L6YM41	DNA_circ_N domain-containing protein (Fragment)	NA
UHGV-2183150_42	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-2183150_42	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-2183150_42	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-2183150_42	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-2183150_43	PHROG	phrog_177	tail protein	tail
UHGV-2183150_43	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-2183150_43	eggNOG-mapper	1316927.ATKI01000070_gene1242	tail protein	NA
UHGV-2183150_43	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-2183150_43	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-2183150_43	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2183150_45	UniRef90	UniRef90_A0A3D3SHB9	Baseplate assembly protein (Fragment)	NA
UHGV-2183150_45	eggNOG-mapper	1224136.AMFN01000003_gene3613	assembly, protein	NA
UHGV-2183150_45	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-2183150_45	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-2183150_45	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-2183150_45	COG	COG4384	NA	NA
UHGV-2183150_45	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-2183150_46	PHROG	phrog_180	tail protein	tail
UHGV-2183150_46	UniRef90	UniRef90_A0A1H4V1S5	Mu-like prophage protein gp46	NA
UHGV-2183150_46	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-2183150_46	Pfam	PF07409	NA	GP46
UHGV-2183150_46	COG	COG4381	NA	NA
UHGV-2183150_46	Structural annotation	PF07409, COG4381	NA	NA
UHGV-2183150_47	PHROG	phrog_6	baseplate protein	tail
UHGV-2183150_47	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-2183150_47	eggNOG-mapper	690850.Desaf_0706	Baseplate J-like protein	NA
UHGV-2183150_47	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2183150_47	COG	COG3299	NA	NA
UHGV-2183150_47	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2183150_48	PHROG	phrog_203	tail protein	tail
UHGV-2183150_48	UniRef90	UniRef90_A0A6L6YM70	NA	NA
UHGV-2183150_48	eggNOG-mapper	690850.Desaf_1931	NA	NA
UHGV-2183150_48	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2183150_48	COG	COG3778	NA	NA
UHGV-2183150_48	Structural annotation	PF10076, COG3778	NA	NA
UHGV-2183150_49	PHROG	phrog_19618	tail collar protein	tail
UHGV-2183150_49	UniRef90	UniRef90_A0A6L6YMH3	Collar domain-containing protein	NA
UHGV-2183150_49	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-2183150_49	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-2183150_49	COG	COG4675	Phage tail collar domain	NA
UHGV-2183150_49	Structural annotation	PF07484, COG4675	NA	NA
UHGV-2183150_50	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-2183150_50	COG	COG4675	Phage tail collar domain	NA
UHGV-2183150_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2183150_52	UniRef90	UniRef90_UPI0013F5AF5C	NA	NA
UHGV-2183150_52	eggNOG-mapper	556268.OFAG_00345	NA	NA
UHGV-2183150_53	KOfam	K14059	int; integrase	NA
UHGV-2183150_53	PHROG	phrog_1	integrase	integration and excision
UHGV-2183150_53	UniRef90	UniRef90_UPI0013F5D556	integrase arm-type DNA-binding domain-containing protein	NA
UHGV-2183150_53	eggNOG-mapper	742821.HMPREF9464_01814	Belongs to the 'phage' integrase family	NA
UHGV-2183150_53	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-2183150_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2183150_54	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-2183150_54	Structural annotation	PF16083, TIGR01594	NA	NA
UHGV-2183150_56	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2183150_56	PHROG	phrog_894	endolysin	lysis
UHGV-2183150_56	UniRef90	UniRef90_A0A3D4GBZ5	Peptidase_M15_3 domain-containing protein	NA
UHGV-2183150_56	eggNOG-mapper	572547.Amico_1100	Peptidase M15	NA
UHGV-2183150_56	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2183150_56	COG	COG3108	NA	NA
UHGV-2183150_56	Structural annotation	PF05951, COG3108	NA	NA