UHGV-2183224

Genome information

Genome length 31,191 bps

CDS count 45

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-2183224
vOTU ID	vOTU-014421
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029873\|Ga0245321_100614\|provirus_5540_36730
BioSample	SAMEA3449371
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.17
Jumbo phage	No

Genome content
Genome length	31,191 bps
GC content	57.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.19%
Average CDS length	651.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2183224_1	PHROG	phrog_1129	holin	lysis
UHGV-2183224_1	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-2183224_1	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2183224_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2183224_1	Structural annotation	PF06946	NA	NA
UHGV-2183224_2	PHROG	phrog_4105	NA	unknown function
UHGV-2183224_2	eggNOG-mapper	397288.C806_00115	NA	NA
UHGV-2183224_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2183224_3	PHROG	phrog_1794	amidase	lysis
UHGV-2183224_3	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-2183224_3	eggNOG-mapper	1235800.C819_03946	Ami_2	NA
UHGV-2183224_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2183224_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2183224_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2183224_4	Structural annotation	PF00629, NF033675	NA	NA
UHGV-2183224_5	eggNOG-mapper	1536772.R70723_29220	ATPase involved in DNA repair	NA
UHGV-2183224_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2183224_6	PHROG	phrog_3558	tail protein	tail
UHGV-2183224_6	UniRef90	UniRef90_A0A3D1VAY1	Prophage_tail domain-containing protein	NA
UHGV-2183224_6	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-2183224_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2183224_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2183224_6	COG	COG4926	Phage-related protein	NA
UHGV-2183224_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2183224_7	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-2183224_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-2183224_7	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2183224_8	PHROG	phrog_23464	NA	unknown function
UHGV-2183224_8	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-2183224_8	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-2183224_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2183224_8	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2183224_9	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-2183224_10	Structural annotation	PF17388	NA	NA
UHGV-2183224_11	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2183224_11	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-2183224_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2183224_12	Structural annotation	PF05657	NA	NA
UHGV-2183224_13	UniRef90	UniRef90_A0A3A6N4L9	HK97 gp10 family phage protein	NA
UHGV-2183224_13	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-2183224_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2183224_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2183224_14	UniRef90	UniRef90_UPI00189BA764	phage head closure protein	NA
UHGV-2183224_14	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-2183224_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2183224_14	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-2183224_15	PHROG	phrog_5223	neck protein	connector
UHGV-2183224_15	UniRef90	UniRef90_UPI000BEC4770	head-tail connector protein	NA
UHGV-2183224_15	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-2183224_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2183224_15	Structural annotation	TIGR01560	NA	NA
UHGV-2183224_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-2183224_16	UniRef90	UniRef90_A0A2V2GLX5	Phage major capsid protein	NA
UHGV-2183224_16	eggNOG-mapper	1094508.Tsac_2424	Phage capsid family	NA
UHGV-2183224_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2183224_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2183224_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2183224_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2183224_17	KOfam	K06904	NA	NA
UHGV-2183224_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2183224_17	UniRef90	UniRef90_A0A2V2GKJ3	HK97 family phage prohead protease	NA
UHGV-2183224_17	eggNOG-mapper	1321814.HMPREF9089_00929	Caudovirus prohead serine protease	NA
UHGV-2183224_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2183224_17	COG	COG3740	Phage head maturation protease	NA
UHGV-2183224_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2183224_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-2183224_18	UniRef90	UniRef90_A0A2V2GK98	Portal protein	NA
UHGV-2183224_18	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-2183224_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2183224_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2183224_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2183224_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2183224_19	UniRef90	UniRef90_A0A2V2GHH0	Terminase large subunit	NA
UHGV-2183224_19	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-2183224_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2183224_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2183224_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2183224_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2183224_20	PHROG	phrog_1066	NA	unknown function
UHGV-2183224_20	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-2183224_20	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2183224_21	UniRef90	UniRef90_UPI0009BF3675	HNH endonuclease	NA
UHGV-2183224_21	eggNOG-mapper	561177.ANHYDRO_01404	HNH nucleases	NA
UHGV-2183224_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2183224_22	PHROG	phrog_17658	NA	unknown function
UHGV-2183224_22	eggNOG-mapper	536233.CLO_0894	NA	NA
UHGV-2183224_22	Structural annotation	PF18116	NA	NA
UHGV-2183224_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2183224_24	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-2183224_24	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2183224_24	Pfam	PF07374	NA	DUF1492
UHGV-2183224_24	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2183224_26	PHROG	phrog_5781	NA	unknown function
UHGV-2183224_26	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-2183224_26	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2183224_26	Pfam	PF14359	NA	DUF4406
UHGV-2183224_26	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2183224_26	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2183224_27	PHROG	phrog_15609	NA	unknown function
UHGV-2183224_27	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-2183224_27	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-2183224_27	Pfam	PF11300	NA	DUF3102
UHGV-2183224_27	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2183224_27	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2183224_28	PHROG	phrog_8470	NA	unknown function
UHGV-2183224_28	UniRef90	UniRef90_UPI001C1063FF	PcfJ domain-containing protein	NA
UHGV-2183224_28	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-2183224_28	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2183224_28	Structural annotation	PF14284	NA	NA
UHGV-2183224_29	PHROG	phrog_38338	NA	unknown function
UHGV-2183224_29	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2183224_29	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-2183224_30	KOfam	K03700	recU; recombination protein U	NA
UHGV-2183224_30	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2183224_30	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2183224_30	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2183224_30	Pfam	PF03838	Recombination protein U	RecU
UHGV-2183224_30	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2183224_30	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2183224_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2183224_31	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-2183224_31	Structural annotation	PF21578	NA	NA
UHGV-2183224_33	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2183224_33	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2183224_33	UniRef90	UniRef90_UPI000FDBF9C5	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2183224_33	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-2183224_33	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2183224_33	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2183224_33	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2183224_33	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2183224_34	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-2183224_38	UniRef90	UniRef90_UPI001655DBB5	helix-turn-helix domain-containing protein	NA
UHGV-2183224_38	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-2183224_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183224_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2183224_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2183224_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2183224_39	UniRef90	UniRef90_A0A095XNQ4	HTH cro/C1-type domain-containing protein	NA
UHGV-2183224_39	eggNOG-mapper	706433.HMPREF9430_01295	NA	NA
UHGV-2183224_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2183224_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183224_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2183224_39	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-2183224_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2183224_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2183224_40	UniRef90	UniRef90_A0A8J8SBC4	Helix-turn-helix transcriptional regulator	NA
UHGV-2183224_40	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-2183224_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183224_40	Pfam	PF15731	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MqsA_antitoxin
UHGV-2183224_40	NCBIFam	TIGR03830.1	type II TA system antitoxin MqsA family protein	NA
UHGV-2183224_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2183224_40	Structural annotation	PF01381, PF21291, NF041951, TIGR02607, COG3655, COG1476	NA	NA
UHGV-2183224_41	PHROG	phrog_1914	NA	unknown function
UHGV-2183224_41	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2183224_41	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2183224_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2183224_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2183224_41	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2183224_42	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-2183224_43	Structural annotation	PF21227	NA	NA
UHGV-2183224_44	PHROG	phrog_5783	NA	unknown function
UHGV-2183224_44	UniRef90	UniRef90_A0A7X5E2S9	NYN domain-containing protein	NA
UHGV-2183224_44	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-2183224_44	Pfam	PF01936	NYN domain	NYN
UHGV-2183224_44	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2183224_44	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2183224_45	KOfam	K14059	int; integrase	NA
UHGV-2183224_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2183224_45	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-2183224_45	eggNOG-mapper	626523.GCWU000342_00320	Belongs to the 'phage' integrase family	NA
UHGV-2183224_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2183224_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2183224_45	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA