UHGV-2183262

Genome information

Genome length 22,281 bps

CDS count 37

Completeness 58.19% (medium-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-2183262
vOTU ID	vOTU-031881
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029849\|Ga0245286_100403\|provirus_128_22408
BioSample	SAMEA3449337
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.02
Jumbo phage	No

Genome content
Genome length	22,281 bps
GC content	43.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	94.52%
Average CDS length	573.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2183262_1	Structural annotation	PF21279, NF040942	NA	NA
UHGV-2183262_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2183262_2	UniRef90	UniRef90_A0A1C5VPR8	ATPase involved in DNA repair	NA
UHGV-2183262_2	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2183262_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2183262_2	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2183262_2	Structural annotation	PF06152, PF21814	NA	NA
UHGV-2183262_3	PHROG	phrog_25639	NA	unknown function
UHGV-2183262_3	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-2183262_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-2183262_4	UniRef90	UniRef90_UPI001C03775E	capsid protein	NA
UHGV-2183262_4	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-2183262_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2183262_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2183262_5	PHROG	phrog_10250	NA	unknown function
UHGV-2183262_5	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-2183262_5	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-2183262_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-2183262_5	Structural annotation	PF17289, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-2183262_6	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-2183262_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-2183262_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2183262_7	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2183262_7	UniRef90	UniRef90_UPI001C0332B0	terminase small subunit	NA
UHGV-2183262_7	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-2183262_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2183262_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2183262_7	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2183262_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2183262_9	UniRef90	UniRef90_A0A3A9HG24	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2183262_9	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-2183262_9	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2183262_13	PHROG	phrog_3205	NA	unknown function
UHGV-2183262_13	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-2183262_13	eggNOG-mapper	1035196.HMPREF9998_01732	NA	NA
UHGV-2183262_14	PHROG	phrog_8684	NA	unknown function
UHGV-2183262_14	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-2183262_14	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-2183262_14	Pfam	PF09643	YopX protein	YopX
UHGV-2183262_14	Pfam	PF04448	NA	DUF551
UHGV-2183262_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2183262_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2183262_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2183262_16	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-2183262_16	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-2183262_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2183262_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2183262_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2183262_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2183262_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2183262_17	PHROG	phrog_29887	NA	unknown function
UHGV-2183262_17	UniRef90	UniRef90_UPI001379B79E	NA	NA
UHGV-2183262_18	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2183262_18	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-2183262_18	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-2183262_18	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2183262_18	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2183262_18	COG	COG3617	Prophage antirepressor	NA
UHGV-2183262_18	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2183262_19	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2183262_19	UniRef90	UniRef90_UPI0015704587	NA	NA
UHGV-2183262_19	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-2183262_19	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2183262_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2183262_19	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-2183262_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2183262_20	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2183262_20	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-2183262_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2183262_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2183262_21	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2183262_21	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2183262_21	UniRef90	UniRef90_UPI001C026F6F	recombinase RecT	NA
UHGV-2183262_21	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-2183262_21	Pfam	PF03837	RecT family	RecT
UHGV-2183262_21	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2183262_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2183262_21	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2183262_22	PHROG	phrog_674	NA	unknown function
UHGV-2183262_22	UniRef90	UniRef90_UPI001C0153C8	NA	NA
UHGV-2183262_22	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-2183262_22	Pfam	PF07083	NA	DUF1351
UHGV-2183262_22	Structural annotation	PF07083	NA	NA
UHGV-2183262_23	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2183262_23	UniRef90	UniRef90_UPI001C0120DF	YqaJ viral recombinase family protein	NA
UHGV-2183262_23	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-2183262_23	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2183262_23	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2183262_23	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2183262_23	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2183262_25	Structural annotation	PF19128	NA	NA
UHGV-2183262_26	PHROG	phrog_3777	NA	unknown function
UHGV-2183262_26	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-2183262_26	Structural annotation	PF18441	NA	NA
UHGV-2183262_28	PHROG	phrog_6058	NA	unknown function
UHGV-2183262_28	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-2183262_28	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-2183262_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183262_28	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-2183262_30	UniRef90	UniRef90_R6BIK1	HTH cro/C1-type domain-containing protein	NA
UHGV-2183262_30	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2183262_30	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2183262_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2183262_32	UniRef90	UniRef90_UPI001C0275D7	helix-turn-helix domain-containing protein	NA
UHGV-2183262_32	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-2183262_32	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2183262_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2183262_35	eggNOG-mapper	1179226.AJXO01000005_gene1810	NA	NA
UHGV-2183262_36	PHROG	phrog_15412	NA	unknown function
UHGV-2183262_36	UniRef90	UniRef90_UPI00156E50E6	heavy metal-binding domain-containing protein	NA
UHGV-2183262_36	eggNOG-mapper	537013.CLOSTMETH_03242	Putative heavy-metal-binding	NA
UHGV-2183262_36	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-2183262_36	COG	COG0393	NA	NA
UHGV-2183262_37	KOfam	K14059	int; integrase	NA
UHGV-2183262_37	PHROG	phrog_1	integrase	integration and excision
UHGV-2183262_37	UniRef90	UniRef90_A0A1C5QPZ2	Integrase	NA
UHGV-2183262_37	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-2183262_37	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2183262_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2183262_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2183262_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2183262_37	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA