UHGV-2183289

Genome information

vOTU vOTU-041984

Genome length 35,415 bps

CDS count 41

Completeness 77.00% (medium-quality)

geNomad score 0.9645

Prediction confidence Confident

Genome information
Genome ID	UHGV-2183289
vOTU ID	vOTU-041984
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029855\|Ga0245295_1000413\|provirus_31992_67406
BioSample	SAMEA3449346
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9645
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.14
Jumbo phage	No

Genome content
Genome length	35,415 bps
GC content	57.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.40%
Average CDS length	818.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2183289_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2183289_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2183289_1	UniRef90	UniRef90_A0A1Q6PUH6	Recombinase family protein	NA
UHGV-2183289_1	eggNOG-mapper	397288.C806_04855	resolvase	NA
UHGV-2183289_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2183289_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2183289_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2183289_1	Structural annotation	PF07508, PF16888, NF041201	NA	NA
UHGV-2183289_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2183289_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2183289_2	UniRef90	UniRef90_A0A7X8MI70	Recombinase family protein (Fragment)	NA
UHGV-2183289_2	eggNOG-mapper	663278.Ethha_1857	NA	NA
UHGV-2183289_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2183289_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2183289_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2183289_3	PHROG	phrog_95	integrase	integration and excision
UHGV-2183289_3	UniRef90	UniRef90_A0A0U5PL14	Transposon Tn3 resolvase	NA
UHGV-2183289_3	eggNOG-mapper	568816.Acin_1311	overlaps another CDS with the same product name	NA
UHGV-2183289_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2183289_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-2183289_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2183289_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2183289_3	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2183289_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2183289_4	PHROG	phrog_95	integrase	integration and excision
UHGV-2183289_4	UniRef90	UniRef90_UPI001898776D	recombinase family protein	NA
UHGV-2183289_4	eggNOG-mapper	663278.Ethha_1856	Resolvase, N terminal domain	NA
UHGV-2183289_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2183289_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-2183289_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2183289_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2183289_5	PHROG	phrog_2996	NA	unknown function
UHGV-2183289_5	eggNOG-mapper	573061.Clocel_3958	NA	NA
UHGV-2183289_5	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-2183289_5	Structural annotation	PF20612	NA	NA
UHGV-2183289_6	PHROG	phrog_2308	NA	unknown function
UHGV-2183289_6	UniRef90	UniRef90_A0A0D0SL38	Zinc-finger protein	NA
UHGV-2183289_6	eggNOG-mapper	397291.C804_05251	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2183289_6	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2183289_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2183289_6	Structural annotation	PF06056, COG2771	NA	NA
UHGV-2183289_7	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-2183289_7	PHROG	phrog_2649	endolysin	lysis
UHGV-2183289_7	UniRef90	UniRef90_A0A7X7I3U6	SH3 domain-containing protein	NA
UHGV-2183289_7	eggNOG-mapper	871963.Desdi_1346	NLP P60 protein	NA
UHGV-2183289_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2183289_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2183289_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2183289_7	Structural annotation	PF01471, PF19087, NF041850, TIGR02219, COG3409, COG3103, COG0791	NA	NA
UHGV-2183289_8	PHROG	phrog_199	holin	lysis
UHGV-2183289_8	UniRef90	UniRef90_A0A7X7I309	Phage holin family protein	NA
UHGV-2183289_8	eggNOG-mapper	665956.HMPREF1032_02249	toxin secretion phage lysis holin	NA
UHGV-2183289_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2183289_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2183289_8	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2183289_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2183289_9	Structural annotation	PF09792, NF033679	NA	NA
UHGV-2183289_10	PHROG	phrog_372	tail protein	tail
UHGV-2183289_10	UniRef90	UniRef90_UPI001F1AF627	NA	NA
UHGV-2183289_10	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-2183289_10	Pfam	PF05895	NA	DUF859
UHGV-2183289_10	COG	COG4675	Phage tail collar domain	NA
UHGV-2183289_10	Structural annotation	PF05895, MF_04116, NF010681, NF012201, COG3291	NA	NA
UHGV-2183289_11	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2183289_11	eggNOG-mapper	883114.HMPREF9709_01182	Phage minor structural protein	NA
UHGV-2183289_11	COG	COG4926	Phage-related protein	NA
UHGV-2183289_11	Structural annotation	PF01105	NA	NA
UHGV-2183289_12	PHROG	phrog_3267	tail protein	tail
UHGV-2183289_12	eggNOG-mapper	476272.RUMHYD_01485	candidate retaining b-glycosidase, glycoside hydrolase family 5 protein K01238	NA
UHGV-2183289_12	Structural annotation	PF16407, PF03921, PF03404, PF07354, MF_04116, NF010681, COG3291	NA	NA
UHGV-2183289_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2183289_13	UniRef90	UniRef90_UPI0002E008E0	phage tail protein	NA
UHGV-2183289_13	eggNOG-mapper	1540257.JQMW01000009_gene3384	Phage minor structural protein	NA
UHGV-2183289_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2183289_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2183289_13	COG	COG4926	Phage-related protein	NA
UHGV-2183289_14	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2183289_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2183289_14	UniRef90	UniRef90_A0A2V2EJF6	HTH cro/C1-type domain-containing protein	NA
UHGV-2183289_14	eggNOG-mapper	1408321.JNJD01000009_gene1800	Helix-turn-helix domain	NA
UHGV-2183289_14	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2183289_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183289_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2183289_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2183289_15	UniRef90	UniRef90_A0A3D2JKP8	Phage tail protein (Fragment)	NA
UHGV-2183289_15	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-2183289_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-2183289_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2183289_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2183289_16	UniRef90	UniRef90_UPI001BCA5E7A	phage tail tape measure protein	NA
UHGV-2183289_16	eggNOG-mapper	411490.ANACAC_00728	Phage tail tape measure protein, TP901 family	NA
UHGV-2183289_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2183289_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2183289_16	COG	COG5283	Phage-related tail protein	NA
UHGV-2183289_17	eggNOG-mapper	397291.C804_02104	NA	NA
UHGV-2183289_18	KOfam	K06926	NA	NA
UHGV-2183289_18	PHROG	phrog_5836	NA	unknown function
UHGV-2183289_18	UniRef90	UniRef90_UPI00048FCA04	ATP-binding protein	NA
UHGV-2183289_18	eggNOG-mapper	1226325.HMPREF1548_05269	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-2183289_18	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-2183289_18	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-2183289_18	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-2183289_18	Structural annotation	PF13304, MF_00365, NF041760, COG4637	NA	NA
UHGV-2183289_19	UniRef90	UniRef90_UPI00099A40D6	phage tail assembly chaperone	NA
UHGV-2183289_20	PHROG	phrog_2115	tail protein	tail
UHGV-2183289_20	eggNOG-mapper	1382315.JPOI01000001_gene275	NA	NA
UHGV-2183289_20	Structural annotation	PF11836	NA	NA
UHGV-2183289_21	PHROG	phrog_88	major tail protein	tail
UHGV-2183289_21	UniRef90	UniRef90_A0A0K2WC87	Phage major tail protein, phi13 family	NA
UHGV-2183289_21	eggNOG-mapper	1329516.JPST01000016_gene403	Phage major tail protein phi13	NA
UHGV-2183289_21	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-2183289_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2183289_21	COG	COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	NA
UHGV-2183289_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2183289_22	PHROG	phrog_78	tail terminator	connector
UHGV-2183289_22	UniRef90	UniRef90_UPI0004147119	NA	NA
UHGV-2183289_22	eggNOG-mapper	1120971.AUCA01000037_gene2903	NA	NA
UHGV-2183289_22	Structural annotation	PF05657	NA	NA
UHGV-2183289_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2183289_23	UniRef90	UniRef90_A0A069RGG4	HK97 family phage protein	NA
UHGV-2183289_23	eggNOG-mapper	649747.HMPREF0083_01006	Phage protein, HK97 gp10 family	NA
UHGV-2183289_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2183289_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2183289_23	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2183289_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-2183289_24	UniRef90	UniRef90_UPI00197E0084	phage head closure protein	NA
UHGV-2183289_24	eggNOG-mapper	649747.HMPREF0083_01007	Phage head-tail adaptor	NA
UHGV-2183289_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2183289_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2183289_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2183289_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2183289_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2183289_25	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-2183289_25	eggNOG-mapper	358220.C380_12135	Phage gp6-like head-tail connector protein	NA
UHGV-2183289_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2183289_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2183289_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2183289_26	PHROG	phrog_12102	NA	unknown function
UHGV-2183289_26	UniRef90	UniRef90_A0A7C6BMC0	Head fiber protein	NA
UHGV-2183289_26	eggNOG-mapper	665956.HMPREF1032_02264	NA	NA
UHGV-2183289_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-2183289_27	UniRef90	UniRef90_A0A7X7N3N3	Phage major capsid protein	NA
UHGV-2183289_27	eggNOG-mapper	1499680.CCFE01000031_gene3759	Phage capsid family	NA
UHGV-2183289_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2183289_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2183289_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2183289_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2183289_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2183289_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2183289_28	UniRef90	UniRef90_A0A7C6FMN1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2183289_28	eggNOG-mapper	1216932.CM240_0674	Belongs to the peptidase S14 family	NA
UHGV-2183289_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2183289_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2183289_28	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2183289_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-2183289_29	UniRef90	UniRef90_A0A7C6FQM5	Phage portal protein	NA
UHGV-2183289_29	eggNOG-mapper	1121289.JHVL01000007_gene2755	Phage portal protein, HK97 family	NA
UHGV-2183289_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2183289_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2183289_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2183289_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2183289_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2183289_30	UniRef90	UniRef90_B0MB14	Putative phage terminase, large subunit	NA
UHGV-2183289_30	eggNOG-mapper	1121334.KB911068_gene2288	large subunit	NA
UHGV-2183289_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2183289_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2183289_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2183289_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2183289_33	eggNOG-mapper	665956.HMPREF1032_02270	NA	NA
UHGV-2183289_34	eggNOG-mapper	665956.HMPREF1032_02270	NA	NA
UHGV-2183289_35	PHROG	phrog_6231	NA	unknown function
UHGV-2183289_35	UniRef90	UniRef90_A0A1B8WU91	Nmad4 domain-containing protein	NA
UHGV-2183289_35	eggNOG-mapper	1121334.KB911068_gene2287	NA	NA
UHGV-2183289_35	Pfam	PF18756	Nucleotide modification associated domain 4	Nmad4
UHGV-2183289_35	Structural annotation	PF18756	NA	NA
UHGV-2183289_38	PHROG	phrog_3777	NA	unknown function
UHGV-2183289_38	UniRef90	UniRef90_A0A3E4WXS9	NA	NA
UHGV-2183289_38	eggNOG-mapper	658086.HMPREF0994_02118	NA	NA
UHGV-2183289_38	Pfam	PF12957	NA	DUF3846
UHGV-2183289_38	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-2183289_38	Structural annotation	PF12957	NA	NA
UHGV-2183289_39	PHROG	phrog_8677	NA	unknown function
UHGV-2183289_39	UniRef90	UniRef90_Q3Z7J5	Virulence-related protein	NA
UHGV-2183289_39	eggNOG-mapper	243164.DET1089	NA	NA
UHGV-2183289_39	Pfam	PF16468	NA	DUF5049
UHGV-2183289_39	Structural annotation	PF16468	NA	NA
UHGV-2183289_40	PHROG	phrog_3782	NA	unknown function
UHGV-2183289_40	UniRef90	UniRef90_A0A1H0E7B1	NA	NA
UHGV-2183289_40	eggNOG-mapper	1216932.CM240_0616	NA	NA
UHGV-2183289_40	Pfam	PF14192	NA	DUF4314
UHGV-2183289_40	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2183289_40	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-2183289_41	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2183289_41	UniRef90	UniRef90_A0A2R2ZJK5	Virulence-like protein	NA
UHGV-2183289_41	eggNOG-mapper	665956.HMPREF1032_02276	NA	NA
UHGV-2183289_41	AcrCatalog	cluster_58247	NA	NA
UHGV-2183289_41	Structural annotation	PF12224, MF_01609, NF010045, COG2170	NA	NA