UHGV-2183601

Genome information

Genome length 40,910 bps

CDS count 59

Completeness 94.71% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-2183601
vOTU ID	vOTU-012163
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029852\|Ga0245291_100147\|provirus_38568_79477
BioSample	SAMEA3449342
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.43
Jumbo phage	No

Genome content
Genome length	40,910 bps
GC content	46.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.13%
Average CDS length	649.37 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2183601_1	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-2183601_1	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-2183601_1	UniRef90	UniRef90_R9MVS9	Co-chaperonin GroES	NA
UHGV-2183601_1	eggNOG-mapper	397287.C807_01760	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-2183601_1	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-2183601_1	NCBIFam	NF001531.0	co-chaperone GroES	NA
UHGV-2183601_1	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-2183601_1	HAMAP	MF_00580	Co-chaperonin GroES [groES]	NA
UHGV-2183601_1	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-2183601_2	KOfam	K07273	acm; lysozyme	NA
UHGV-2183601_2	PHROG	phrog_291	endolysin	lysis
UHGV-2183601_2	UniRef90	UniRef90_A0A1C5ZRX7	Autolytic lysozyme	NA
UHGV-2183601_2	eggNOG-mapper	1226325.HMPREF1548_03449	Glycosyl hydrolases family 25	NA
UHGV-2183601_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2183601_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2183601_2	Structural annotation	PF01183, COG3757	NA	NA
UHGV-2183601_3	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-2183601_4	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-2183601_5	PHROG	phrog_199	holin	lysis
UHGV-2183601_5	UniRef90	UniRef90_A0A1C5ZRM9	Phage-related holin (Lysis protein)	NA
UHGV-2183601_5	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-2183601_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2183601_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2183601_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2183601_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2183601_6	PHROG	phrog_18593	NA	unknown function
UHGV-2183601_6	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-2183601_6	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-2183601_6	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2183601_6	Structural annotation	PF14600	NA	NA
UHGV-2183601_9	PHROG	phrog_18725	NA	unknown function
UHGV-2183601_9	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-2183601_10	PHROG	phrog_13879	NA	unknown function
UHGV-2183601_10	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2183601_10	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2183601_11	PHROG	phrog_1194	NA	unknown function
UHGV-2183601_11	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-2183601_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2183601_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2183601_12	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-2183601_12	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-2183601_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2183601_13	PHROG	phrog_706	NA	unknown function
UHGV-2183601_13	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-2183601_13	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2183601_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2183601_14	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-2183601_14	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-2183601_14	Pfam	PF20378	NA	DUF6673
UHGV-2183601_14	Structural annotation	PF10666	NA	NA
UHGV-2183601_15	PHROG	phrog_3099	NA	unknown function
UHGV-2183601_15	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-2183601_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2183601_16	PHROG	phrog_3266	tail completion	connector
UHGV-2183601_16	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-2183601_16	Structural annotation	PF12691	NA	NA
UHGV-2183601_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2183601_17	UniRef90	UniRef90_UPI001D069E73	minor capsid protein	NA
UHGV-2183601_17	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-2183601_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2183601_17	Structural annotation	PF11114	NA	NA
UHGV-2183601_18	PHROG	phrog_3366	NA	unknown function
UHGV-2183601_18	Pfam	PF20536	NA	DUF6751
UHGV-2183601_18	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-2183601_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2183601_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2183601_21	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2183601_21	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-2183601_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2183601_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2183601_22	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-2183601_22	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2183601_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2183601_22	Structural annotation	PF06810	NA	NA
UHGV-2183601_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2183601_24	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-2183601_24	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-2183601_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2183601_24	COG	COG2369	NA	NA
UHGV-2183601_24	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2183601_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-2183601_25	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-2183601_25	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-2183601_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2183601_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2183601_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2183601_26	UniRef90	UniRef90_A0A3E3HWR5	Terminase_3 domain-containing protein	NA
UHGV-2183601_26	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-2183601_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2183601_26	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2183601_27	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2183601_27	UniRef90	UniRef90_UPI001C3AE805	Terminase	NA
UHGV-2183601_27	eggNOG-mapper	1235798.C817_03483	DNA packaging	NA
UHGV-2183601_27	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2183601_27	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2183601_27	COG	COG5484	NA	NA
UHGV-2183601_27	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-2183601_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2183601_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2183601_29	UniRef90	UniRef90_UPI00164C8168	ParA family protein	NA
UHGV-2183601_29	eggNOG-mapper	1254432.SCE1572_52550	COG1192 ATPases involved in chromosome partitioning	NA
UHGV-2183601_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-2183601_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2183601_29	Structural annotation	PF13614, MF_00355, TIGR03453, COG1192	NA	NA
UHGV-2183601_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2183601_30	UniRef90	UniRef90_A0A7G5MSQ2	RNA polymerase subunit sigma-70	NA
UHGV-2183601_30	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-2183601_30	Structural annotation	PF02996	NA	NA
UHGV-2183601_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2183601_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2183601_32	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2183601_32	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-2183601_32	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2183601_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2183601_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2183601_32	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2183601_33	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-2183601_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2183601_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2183601_37	UniRef90	UniRef90_UPI001897F4FC	AAA family ATPase	NA
UHGV-2183601_37	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-2183601_37	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2183601_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2183601_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-2183601_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2183601_38	PHROG	phrog_9804	NA	unknown function
UHGV-2183601_38	UniRef90	UniRef90_UPI0010F7C879	replicative helicase loader/inhibitor	NA
UHGV-2183601_38	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2183601_39	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2183601_39	UniRef90	UniRef90_UPI00189CEC52	NA	NA
UHGV-2183601_39	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-2183601_39	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2183601_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2183601_39	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-2183601_40	PHROG	phrog_1029	NA	unknown function
UHGV-2183601_40	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-2183601_40	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-2183601_40	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2183601_41	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2183601_41	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-2183601_42	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2183601_42	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-2183601_42	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2183601_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2183601_42	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2183601_43	PHROG	phrog_7566	NA	unknown function
UHGV-2183601_43	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-2183601_44	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2183601_44	UniRef90	UniRef90_A0A6N7WPC7	NA	NA
UHGV-2183601_44	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-2183601_44	Pfam	PF12684	NA	DUF3799
UHGV-2183601_44	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2183601_44	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2183601_45	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2183601_45	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-2183601_45	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-2183601_45	Pfam	PF03837	RecT family	RecT
UHGV-2183601_45	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2183601_46	PHROG	phrog_1499	NA	unknown function
UHGV-2183601_46	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-2183601_46	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-2183601_46	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2183601_46	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-2183601_48	eggNOG-mapper	411902.CLOBOL_05754	NA	NA
UHGV-2183601_48	Structural annotation	PF02151	NA	NA
UHGV-2183601_52	PHROG	phrog_16447	NA	unknown function
UHGV-2183601_52	UniRef90	UniRef90_A0A8E3SN40	NA	NA
UHGV-2183601_52	eggNOG-mapper	1403390.U3PDZ3_9CAUD	NA	NA
UHGV-2183601_52	Pfam	PF10083	NA	DUF2321
UHGV-2183601_52	Structural annotation	PF10083, COG4306	NA	NA
UHGV-2183601_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2183601_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2183601_54	UniRef90	UniRef90_A0A1C5S0Q3	Transcriptional regulator, y4mF family	NA
UHGV-2183601_54	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-2183601_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183601_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2183601_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2183601_55	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2183601_55	UniRef90	UniRef90_A0A1C5S0D9	Helix-turn-helix	NA
UHGV-2183601_55	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2183601_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2183601_55	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2183601_55	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-2183601_56	PHROG	phrog_87	metallo-protease	other
UHGV-2183601_56	UniRef90	UniRef90_A0A1C5S0H8	Metallopeptidase immA	NA
UHGV-2183601_56	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-2183601_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2183601_56	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2183601_56	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2183601_57	PHROG	phrog_5319	outer membrane protein	other
UHGV-2183601_57	UniRef90	UniRef90_A0A1C5S0D2	Predicted membrane protein	NA
UHGV-2183601_57	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-2183601_57	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2183601_57	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2183601_57	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-2183601_58	PHROG	phrog_16228	NA	unknown function
UHGV-2183601_58	UniRef90	UniRef90_A0A416L7T2	Uma2 family endonuclease	NA
UHGV-2183601_58	eggNOG-mapper	97139.C824_00067	Putative restriction endonuclease	NA
UHGV-2183601_58	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-2183601_58	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-2183601_58	Structural annotation	PF05685, COG4636	NA	NA
UHGV-2183601_59	KOfam	K14059	int; integrase	NA
UHGV-2183601_59	PHROG	phrog_1	integrase	integration and excision
UHGV-2183601_59	UniRef90	UniRef90_UPI001C011E7D	tyrosine-type recombinase/integrase	NA
UHGV-2183601_59	eggNOG-mapper	1462527.CCDM010000010_gene473	Phage integrase family	NA
UHGV-2183601_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2183601_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2183601_59	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA