UHGV-2184021

Genome information

Genome length 43,669 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-2184021
vOTU ID	vOTU-014017
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029872\|Ga0245317_100078\|provirus_165_43833
BioSample	SAMEA3449367
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.33
Jumbo phage	No

Genome content
Genome length	43,669 bps
GC content	37.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.01%
Average CDS length	673.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2184021_1	UniRef90	UniRef90_A0A3P1S8M4	NA	NA
UHGV-2184021_1	eggNOG-mapper	511680.BUTYVIB_01764	Putative zincin peptidase	NA
UHGV-2184021_1	Pfam	PF11667	Putative zincin peptidase	DUF3267
UHGV-2184021_2	UniRef90	UniRef90_A0A6L6L5F2	Histidinol dehydrogenase	NA
UHGV-2184021_2	eggNOG-mapper	511680.BUTYVIB_00633	NA	NA
UHGV-2184021_3	eggNOG-mapper	1121115.AXVN01000132_gene727	NA	NA
UHGV-2184021_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2184021_4	PHROG	phrog_2742	endolysin	lysis
UHGV-2184021_4	UniRef90	UniRef90_A0A3E4GMT7	MurNAc-LAA domain-containing protein	NA
UHGV-2184021_4	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2184021_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2184021_4	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-2184021_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2184021_4	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-2184021_5	PHROG	phrog_1129	holin	lysis
UHGV-2184021_5	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-2184021_5	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2184021_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2184021_5	Structural annotation	PF16079	NA	NA
UHGV-2184021_6	PHROG	phrog_4105	NA	unknown function
UHGV-2184021_6	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2184021_7	PHROG	phrog_1382	NA	unknown function
UHGV-2184021_7	eggNOG-mapper	742740.HMPREF9474_02334	NA	NA
UHGV-2184021_7	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2184021_8	PHROG	phrog_1382	NA	unknown function
UHGV-2184021_8	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-2184021_8	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2184021_8	Structural annotation	NF040910	NA	NA
UHGV-2184021_9	PHROG	phrog_18126	NA	unknown function
UHGV-2184021_10	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2184021_10	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2184021_10	UniRef90	UniRef90_A0A374E6B3	Reverse transcriptase	NA
UHGV-2184021_10	eggNOG-mapper	742740.HMPREF9474_02336	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-2184021_10	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2184021_10	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2184021_10	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2184021_10	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2184021_11	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-2184021_11	PHROG	phrog_5302	tail protein	tail
UHGV-2184021_11	UniRef90	UniRef90_A0A564WU27	Chromosome partition protein Smc	NA
UHGV-2184021_11	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2184021_11	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2184021_12	PHROG	phrog_38337	NA	unknown function
UHGV-2184021_12	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-2184021_12	Structural annotation	PF10651, COG3470	NA	NA
UHGV-2184021_13	PHROG	phrog_9994	NA	unknown function
UHGV-2184021_13	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-2184021_13	Structural annotation	PF20747	NA	NA
UHGV-2184021_14	PHROG	phrog_538	minor tail protein	tail
UHGV-2184021_14	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-2184021_14	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-2184021_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2184021_14	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2184021_15	UniRef90	UniRef90_A0A415MTE8	Phage tail protein	NA
UHGV-2184021_15	eggNOG-mapper	1280671.AUJH01000012_gene3139	NA	NA
UHGV-2184021_15	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2184021_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2184021_16	UniRef90	UniRef90_A0A348Z0U7	Phage tail tape measure protein	NA
UHGV-2184021_16	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-2184021_16	COG	COG1511	NA	NA
UHGV-2184021_16	Structural annotation	PF20155, COG5281	NA	NA
UHGV-2184021_17	PHROG	phrog_1021	NA	unknown function
UHGV-2184021_19	PHROG	phrog_885	major tail protein	tail
UHGV-2184021_19	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-2184021_19	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2184021_20	Structural annotation	PF12691	NA	NA
UHGV-2184021_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2184021_21	UniRef90	UniRef90_A0A415N123	HK97 gp10 family phage protein	NA
UHGV-2184021_21	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2184021_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2184021_22	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2184021_22	UniRef90	UniRef90_UPI00156E52AA	head-tail adaptor protein	NA
UHGV-2184021_22	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-2184021_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2184021_23	PHROG	phrog_1236	head protein	head and packaging
UHGV-2184021_23	eggNOG-mapper	1235800.C819_02232	NA	NA
UHGV-2184021_23	Structural annotation	PF05135	NA	NA
UHGV-2184021_24	PHROG	phrog_247	major head protein	head and packaging
UHGV-2184021_24	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-2184021_24	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-2184021_24	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2184021_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2184021_25	UniRef90	UniRef90_UPI001373E5C4	phage scaffolding protein	NA
UHGV-2184021_25	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-2184021_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2184021_25	Structural annotation	PF06810	NA	NA
UHGV-2184021_26	Structural annotation	PF00041	NA	NA
UHGV-2184021_28	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2184021_28	UniRef90	UniRef90_A0A374E8T1	Phage_Mu_F domain-containing protein	NA
UHGV-2184021_28	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2184021_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2184021_28	COG	COG2369	NA	NA
UHGV-2184021_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-2184021_29	UniRef90	UniRef90_A0A374E6B1	Phage portal protein	NA
UHGV-2184021_29	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2184021_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2184021_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2184021_30	PHROG	phrog_1233	NA	unknown function
UHGV-2184021_30	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-2184021_30	Structural annotation	PF13058	NA	NA
UHGV-2184021_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2184021_31	PHROG	phrog_5902	NA	unknown function
UHGV-2184021_31	UniRef90	UniRef90_UPI001A922913	terminase B	NA
UHGV-2184021_31	eggNOG-mapper	1235800.C819_02240	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2184021_31	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2184021_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2184021_32	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2184021_32	UniRef90	UniRef90_UPI001177742A	phage terminase small subunit	NA
UHGV-2184021_32	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-2184021_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2184021_32	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2184021_32	COG	COG5484	NA	NA
UHGV-2184021_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2184021_33	eggNOG-mapper	742740.HMPREF9474_02360	NA	NA
UHGV-2184021_33	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-2184021_34	PHROG	phrog_6568	NA	unknown function
UHGV-2184021_34	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-2184021_38	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2184021_38	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2184021_38	UniRef90	UniRef90_A0A374E6H3	DNA primase	NA
UHGV-2184021_38	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-2184021_38	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2184021_38	Pfam	PF19263	NA	DUF5906
UHGV-2184021_38	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2184021_38	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2184021_38	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2184021_38	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2184021_39	Structural annotation	PF05384, NF041271, COG1579	NA	NA
UHGV-2184021_40	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2184021_40	UniRef90	UniRef90_A0A1G5G0M3	DNA polymerase	NA
UHGV-2184021_40	eggNOG-mapper	742740.HMPREF9474_02366	DNA polymerase elongation subunit (Family B)	NA
UHGV-2184021_40	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-2184021_40	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-2184021_41	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2184021_41	UniRef90	UniRef90_A0A374E7W5	NA	NA
UHGV-2184021_41	eggNOG-mapper	742740.HMPREF9474_02367	NA	NA
UHGV-2184021_41	Pfam	PF05037	NA	DUF669
UHGV-2184021_41	Structural annotation	PF05037	NA	NA
UHGV-2184021_42	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2184021_42	UniRef90	UniRef90_UPI001C017367	ATP-binding protein	NA
UHGV-2184021_42	eggNOG-mapper	742740.HMPREF9474_02369	AAA domain	NA
UHGV-2184021_42	Structural annotation	PF13479, MF_00350, TIGR01618, COG2087	NA	NA
UHGV-2184021_45	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-2184021_45	PHROG	phrog_5889	NA	unknown function
UHGV-2184021_45	UniRef90	UniRef90_UPI001C01F314	HD domain-containing protein	NA
UHGV-2184021_45	eggNOG-mapper	742740.HMPREF9474_02372	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-2184021_45	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-2184021_45	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-2184021_47	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2184021_47	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2184021_47	UniRef90	UniRef90_A0A849XTM5	DEAD/DEAH box helicase	NA
UHGV-2184021_47	eggNOG-mapper	742740.HMPREF9474_02377	snf2 family	NA
UHGV-2184021_47	PADLOC	DpdE_00003	DpdE	DPD
UHGV-2184021_47	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2184021_47	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2184021_47	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-2184021_48	PHROG	phrog_5070	NA	unknown function
UHGV-2184021_48	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-2184021_48	eggNOG-mapper	887929.HMP0721_1276	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2184021_48	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2184021_49	PHROG	phrog_30822	NA	unknown function
UHGV-2184021_49	UniRef90	UniRef90_A0A564WRP3	Sigma-70, region 4	NA
UHGV-2184021_49	Structural annotation	PF01381, PF13613, NF041951, COG1476	NA	NA
UHGV-2184021_50	PHROG	phrog_6058	NA	unknown function
UHGV-2184021_50	UniRef90	UniRef90_A0A374E7W1	XRE family transcriptional regulator	NA
UHGV-2184021_50	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-2184021_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2184021_50	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-2184021_51	Structural annotation	PF18330, NF007435, COG3691	NA	NA
UHGV-2184021_52	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-2184021_52	UniRef90	UniRef90_UPI001897AEAF	ORF6N domain-containing protein	NA
UHGV-2184021_52	eggNOG-mapper	33035.JPJF01000057_gene3120	ORF6N domain	NA
UHGV-2184021_52	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2184021_52	Structural annotation	PF10543, PF01381, TIGR02681, COG1396, COG3617	NA	NA
UHGV-2184021_56	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2184021_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2184021_56	UniRef90	UniRef90_UPI001899F946	helix-turn-helix domain-containing protein	NA
UHGV-2184021_56	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2184021_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2184021_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2184021_56	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2184021_57	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-2184021_58	KOfam	K14059	int; integrase	NA
UHGV-2184021_58	PHROG	phrog_1	integrase	integration and excision
UHGV-2184021_58	UniRef90	UniRef90_A0A374E696	Site-specific integrase	NA
UHGV-2184021_58	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-2184021_58	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2184021_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2184021_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2184021_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2184021_58	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA