UHGV-2184025

Genome information

Genome length 34,307 bps

CDS count 52

Completeness 88.64% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-2184025
vOTU ID	vOTU-021448
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029847\|Ga0245281_100023\|provirus_221327_255633
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.34
Jumbo phage	No

Genome content
Genome length	34,307 bps
GC content	45.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.10%
Average CDS length	630.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2184025_1	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2184025_1	UniRef90	UniRef90_UPI0004B3FA8C	AP2 domain-containing protein	NA
UHGV-2184025_1	eggNOG-mapper	1298920.KI911353_gene2694	NA	NA
UHGV-2184025_1	Pfam	PF00847	AP2 domain	AP2
UHGV-2184025_1	Structural annotation	PF18337, PF00847	NA	NA
UHGV-2184025_2	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-2184025_4	UniRef90	UniRef90_UPI001C3EA605	ribbon-helix-helix protein, CopG family	NA
UHGV-2184025_4	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2184025_4	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-2184025_6	KOfam	K07273	acm; lysozyme	NA
UHGV-2184025_6	PHROG	phrog_291	endolysin	lysis
UHGV-2184025_6	UniRef90	UniRef90_C0EHW9	Glycosyl hydrolase family 25	NA
UHGV-2184025_6	eggNOG-mapper	537013.CLOSTMETH_03464	Glycosyl hydrolases family 25	NA
UHGV-2184025_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2184025_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2184025_7	PHROG	phrog_34925	NA	unknown function
UHGV-2184025_7	UniRef90	UniRef90_A0A3D2X4M0	Aminopeptidase	NA
UHGV-2184025_7	eggNOG-mapper	428125.CLOLEP_01419	NA	NA
UHGV-2184025_7	Structural annotation	PF06946	NA	NA
UHGV-2184025_9	UniRef90	UniRef90_UPI001F485105	branched-chain amino acid ABC transporter permease	NA
UHGV-2184025_9	eggNOG-mapper	1232453.BAIF02000013_gene3226	NA	NA
UHGV-2184025_10	PHROG	phrog_18593	NA	unknown function
UHGV-2184025_10	UniRef90	UniRef90_UPI001EDF4BF9	chitinase	NA
UHGV-2184025_10	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-2184025_10	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2184025_11	PHROG	phrog_17472	tail protein	tail
UHGV-2184025_11	UniRef90	UniRef90_G4KPI2	NA	NA
UHGV-2184025_11	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2184025_11	Pfam	PF19789	NA	DUF6273
UHGV-2184025_11	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-2184025_12	PHROG	phrog_35541	NA	unknown function
UHGV-2184025_12	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2184025_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2184025_13	UniRef90	UniRef90_UPI00189C6B60	BppU family phage baseplate upper protein	NA
UHGV-2184025_14	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-2184025_15	PHROG	phrog_26795	NA	unknown function
UHGV-2184025_15	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-2184025_15	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-2184025_15	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2184025_16	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-2184025_16	UniRef90	UniRef90_UPI00111F6E2C	DNRLRE domain-containing protein	NA
UHGV-2184025_16	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-2184025_16	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-2184025_17	PHROG	phrog_33680	NA	unknown function
UHGV-2184025_17	UniRef90	UniRef90_V9HUK2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2184025_17	eggNOG-mapper	755731.Clo1100_0555	tail tape measure protein	NA
UHGV-2184025_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2184025_17	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-2184025_19	PHROG	phrog_709	NA	unknown function
UHGV-2184025_19	UniRef90	UniRef90_A0A2X0XNZ4	Prophage pi2 protein 40	NA
UHGV-2184025_19	eggNOG-mapper	1211814.CAPG01000074_gene3447	NA	NA
UHGV-2184025_19	Structural annotation	PF11836	NA	NA
UHGV-2184025_20	PHROG	phrog_88	major tail protein	tail
UHGV-2184025_20	UniRef90	UniRef90_UPI001031AF27	phage tail protein	NA
UHGV-2184025_20	eggNOG-mapper	665956.HMPREF1032_02259	phage major tail protein, phi13 family	NA
UHGV-2184025_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2184025_20	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-2184025_21	eggNOG-mapper	665956.HMPREF1032_02260	NA	NA
UHGV-2184025_21	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2184025_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2184025_22	UniRef90	UniRef90_A0A1T5A0R3	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2184025_22	eggNOG-mapper	1415774.U728_1249	NA	NA
UHGV-2184025_22	Structural annotation	TIGR01725	NA	NA
UHGV-2184025_23	PHROG	phrog_19734	NA	unknown function
UHGV-2184025_23	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-2184025_23	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-2184025_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2184025_24	PHROG	phrog_749	NA	unknown function
UHGV-2184025_24	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-2184025_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-2184025_25	UniRef90	UniRef90_A0A3C1LY60	Phage major capsid protein	NA
UHGV-2184025_25	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-2184025_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2184025_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2184025_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2184025_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2184025_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2184025_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2184025_26	UniRef90	UniRef90_A0A7X5E0D5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2184025_26	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-2184025_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2184025_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2184025_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2184025_27	UniRef90	UniRef90_A0A318XR56	HK97 family phage portal protein	NA
UHGV-2184025_27	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-2184025_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2184025_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2184025_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2184025_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2184025_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2184025_28	UniRef90	UniRef90_UPI00156EA6D8	terminase large subunit	NA
UHGV-2184025_28	eggNOG-mapper	665956.HMPREF1032_00123	Phage terminase-like protein large subunit	NA
UHGV-2184025_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2184025_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2184025_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2184025_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2184025_29	UniRef90	UniRef90_UPI000C06AD39	P27 family phage terminase small subunit	NA
UHGV-2184025_29	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2184025_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2184025_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2184025_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2184025_30	UniRef90	UniRef90_A0A1C5YEA0	HNH endonuclease	NA
UHGV-2184025_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2184025_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2184025_31	PHROG	phrog_31049	NA	unknown function
UHGV-2184025_31	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-2184025_31	Structural annotation	TIGR01636	NA	NA
UHGV-2184025_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2184025_32	eggNOG-mapper	1160721.RBI_I01590	NA	NA
UHGV-2184025_32	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2184025_35	KOfam	K24451	zim; modification methylase	NA
UHGV-2184025_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2184025_35	UniRef90	UniRef90_A0A845MWG4	Methyltransferase	NA
UHGV-2184025_35	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-2184025_35	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-2184025_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2184025_35	COG	COG0863	DNA modification methylase	NA
UHGV-2184025_35	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2184025_36	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2184025_36	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2184025_36	UniRef90	UniRef90_A0A845MVG4	Helicase	NA
UHGV-2184025_36	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-2184025_36	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2184025_36	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2184025_36	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2184025_36	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-2184025_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2184025_37	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2184025_37	UniRef90	UniRef90_A0A2V2FQV6	ParB domain-containing protein	NA
UHGV-2184025_37	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-2184025_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2184025_37	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2184025_37	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2184025_37	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2184025_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2184025_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2184025_38	UniRef90	UniRef90_A0A3R6M557	PAPS_reduct domain-containing protein	NA
UHGV-2184025_38	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2184025_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2184025_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2184025_38	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-2184025_41	PHROG	phrog_2355	NA	unknown function
UHGV-2184025_41	UniRef90	UniRef90_UPI0014124EFA	aminopeptidase N	NA
UHGV-2184025_41	eggNOG-mapper	1507.HMPREF0262_00831	NA	NA
UHGV-2184025_45	UniRef90	UniRef90_UPI001E328661	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-2184025_45	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-2184025_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2184025_46	Structural annotation	PF12728, NF040990	NA	NA
UHGV-2184025_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2184025_47	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-2184025_47	UniRef90	UniRef90_A0A7U9WT12	HTH-type transcriptional regulator SinR	NA
UHGV-2184025_47	eggNOG-mapper	450851.PHZ_p0231	sequence-specific DNA binding	NA
UHGV-2184025_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2184025_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2184025_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2184025_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2184025_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2184025_48	UniRef90	UniRef90_A0A7X5D1X3	XRE family transcriptional regulator	NA
UHGV-2184025_48	eggNOG-mapper	97138.C820_00784	sequence-specific DNA binding	NA
UHGV-2184025_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2184025_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2184025_48	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-2184025_49	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2184025_49	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2184025_49	UniRef90	UniRef90_UPI001186ABA3	3'-5' exonuclease	NA
UHGV-2184025_49	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-2184025_49	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2184025_49	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2184025_49	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2184025_49	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-2184025_52	KOfam	K14059	int; integrase	NA
UHGV-2184025_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2184025_52	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-2184025_52	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-2184025_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2184025_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2184025_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2184025_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA