UHGV-2184301

Genome information

Genome length 21,882 bps

CDS count 42

Completeness 56.25% (medium-quality)

geNomad score 0.9586

Prediction confidence Confident

Genome information
Genome ID	UHGV-2184301
vOTU ID	vOTU-042222
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029874\|Ga0245322_100068\|provirus_3_21884
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9586
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.38
Jumbo phage	No

Genome content
Genome length	21,882 bps
GC content	33.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	89.68%
Average CDS length	472.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2184301_1	PHROG	phrog_64	portal protein	head and packaging
UHGV-2184301_1	UniRef90	UniRef90_UPI0015EC15DB	phage portal protein	NA
UHGV-2184301_1	eggNOG-mapper	97137.C821_00681	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2184301_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2184301_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2184301_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2184301_2	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2184301_2	UniRef90	UniRef90_A0A0P0EEZ6	Terminase	NA
UHGV-2184301_2	eggNOG-mapper	326425.lhe_1215	Terminase-like family	NA
UHGV-2184301_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2184301_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2184301_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-2184301_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2184301_3	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-2184301_3	UniRef90	UniRef90_N2A371	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2184301_3	eggNOG-mapper	97137.C821_00678	NA	NA
UHGV-2184301_3	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-2184301_3	Structural annotation	PF13022	NA	NA
UHGV-2184301_4	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2184301_4	UniRef90	UniRef90_A0A8A8VL67	NA	NA
UHGV-2184301_4	eggNOG-mapper	324831.LGAS_0601	NA	NA
UHGV-2184301_4	Pfam	PF13643	NA	DUF4145
UHGV-2184301_4	COG	COG1413	HEAT repeat	NA
UHGV-2184301_4	Structural annotation	PF13643, COG2445	NA	NA
UHGV-2184301_5	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-2184301_5	UniRef90	UniRef90_A0A0R2D2J7	NA	NA
UHGV-2184301_5	eggNOG-mapper	1423754.BALY01000011_gene295	Phage transcriptional regulator, ArpU family	NA
UHGV-2184301_5	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-2184301_5	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-2184301_6	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2184301_6	UniRef90	UniRef90_D0R3N3	VRR-NUC domain-containing protein	NA
UHGV-2184301_6	eggNOG-mapper	326425.lhe_1219	VRR_NUC	NA
UHGV-2184301_6	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2184301_6	Structural annotation	PF03838, MF_04160, NF002583	NA	NA
UHGV-2184301_8	eggNOG-mapper	97137.C821_00672	NA	NA
UHGV-2184301_11	PHROG	phrog_30614	NA	unknown function
UHGV-2184301_14	PHROG	phrog_1485	NA	unknown function
UHGV-2184301_14	UniRef90	UniRef90_A0A0R1U7N9	NA	NA
UHGV-2184301_14	eggNOG-mapper	326425.lhe_1223	NA	NA
UHGV-2184301_16	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2184301_16	UniRef90	UniRef90_UPI0007EFF8F9	virulence-associated E family protein	NA
UHGV-2184301_16	eggNOG-mapper	97137.C821_00665	Virulence-associated protein E	NA
UHGV-2184301_16	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2184301_16	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2184301_16	Structural annotation	PF05272, MF_04000, NF011296, COG5545	NA	NA
UHGV-2184301_19	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-2184301_19	UniRef90	UniRef90_UPI001565ED1D	bifunctional DNA primase/polymerase	NA
UHGV-2184301_19	eggNOG-mapper	97137.C821_00664	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-2184301_19	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-2184301_19	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-2184301_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2184301_19	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-2184301_20	eggNOG-mapper	326425.lhe_1227	NA	NA
UHGV-2184301_21	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2184301_21	UniRef90	UniRef90_A0A809KBQ9	Single-stranded DNA-binding protein	NA
UHGV-2184301_21	eggNOG-mapper	326425.lhe_1228	NA	NA
UHGV-2184301_21	Structural annotation	PF05037	NA	NA
UHGV-2184301_22	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2184301_22	UniRef90	UniRef90_UPI001F16A523	ATP-binding protein	NA
UHGV-2184301_22	eggNOG-mapper	326425.lhe_1229	AAA domain	NA
UHGV-2184301_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-2184301_22	COG	COG2887	RecB family exonuclease	NA
UHGV-2184301_22	Structural annotation	PF13479, MF_00348, TIGR01618, COG2087	NA	NA
UHGV-2184301_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2184301_23	UniRef90	UniRef90_A0A0R1HA32	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-2184301_23	eggNOG-mapper	511437.Lbuc_1541	NA	NA
UHGV-2184301_23	Structural annotation	PF17375	NA	NA
UHGV-2184301_24	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2184301_24	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2184301_24	UniRef90	UniRef90_A0A0R1H9Z1	Phage DNA RNA helicase	NA
UHGV-2184301_24	eggNOG-mapper	326425.lhe_1231	Helicase C-terminal domain protein	NA
UHGV-2184301_24	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2184301_24	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2184301_24	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2184301_24	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2184301_24	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2184301_25	UniRef90	UniRef90_U6F9Z5	Adenine phosphoribosyltransferase	NA
UHGV-2184301_25	eggNOG-mapper	575606.HMPREF0525_00573	Helicase C-terminal domain protein	NA
UHGV-2184301_25	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2184301_25	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2184301_27	eggNOG-mapper	97137.C821_00657	NA	NA
UHGV-2184301_29	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2184301_29	UniRef90	UniRef90_UPI0018AADEBD	siphovirus Gp157 family protein	NA
UHGV-2184301_29	eggNOG-mapper	97137.C821_00655	Siphovirus Gp157	NA
UHGV-2184301_29	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2184301_29	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2184301_31	PHROG	phrog_823	NA	unknown function
UHGV-2184301_31	UniRef90	UniRef90_UPI001CC405E3	NA	NA
UHGV-2184301_31	eggNOG-mapper	326425.lhe_1236	NA	NA
UHGV-2184301_31	Structural annotation	PF05595, COG4707	NA	NA
UHGV-2184301_32	PHROG	phrog_12206	NA	unknown function
UHGV-2184301_32	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-2184301_33	PHROG	phrog_20650	NA	unknown function
UHGV-2184301_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2184301_34	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2184301_34	UniRef90	UniRef90_UPI000D7BEB24	phage antirepressor KilAC domain-containing protein	NA
UHGV-2184301_34	eggNOG-mapper	764561.D7RWF4_9CAUD	DNA binding	NA
UHGV-2184301_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2184301_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2184301_34	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2184301_35	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2184301_35	UniRef90	UniRef90_A0A0P0E3T2	Antirepressor	NA
UHGV-2184301_35	eggNOG-mapper	97137.C821_00648	NA	NA
UHGV-2184301_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2184301_35	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-2184301_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2184301_36	UniRef90	UniRef90_A0A0P0EFV1	HTH cro/C1-type domain-containing protein	NA
UHGV-2184301_36	eggNOG-mapper	326425.lhe_1238	Helix-turn-helix XRE-family like proteins	NA
UHGV-2184301_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2184301_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2184301_36	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-2184301_37	PHROG	phrog_87	metallo-protease	other
UHGV-2184301_37	UniRef90	UniRef90_A0A1Y4TYA6	Peptidase_M78 domain-containing protein	NA
UHGV-2184301_37	eggNOG-mapper	326425.lhe_1239	Zn peptidase	NA
UHGV-2184301_37	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2184301_37	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2184301_38	PHROG	phrog_24502	zinc-finger domain protein	other
UHGV-2184301_38	UniRef90	UniRef90_A0A3G6JUK6	LITAF domain-containing protein	NA
UHGV-2184301_38	eggNOG-mapper	326425.lhe_1241	NA	NA
UHGV-2184301_38	Structural annotation	PF02701	NA	NA
UHGV-2184301_39	KOfam	K14059	int; integrase	NA
UHGV-2184301_39	PHROG	phrog_1	integrase	integration and excision
UHGV-2184301_39	UniRef90	UniRef90_A0A809VU59	Site-specific integrase	NA
UHGV-2184301_39	eggNOG-mapper	326425.lhe_1242	Belongs to the 'phage' integrase family	NA
UHGV-2184301_39	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2184301_39	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2184301_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2184301_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2184301_39	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2184301_40	PHROG	phrog_34276	NA	unknown function
UHGV-2184301_40	UniRef90	UniRef90_Q5FJS9	NA	NA
UHGV-2184301_40	eggNOG-mapper	891391.LAC30SC_06740	Uncharacterised 5xTM membrane BCR, YitT family COG1284	NA
UHGV-2184301_40	Pfam	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284	YitT_membrane
UHGV-2184301_40	Pfam	PF10035	NA	DUF2179
UHGV-2184301_40	COG	COG1284	NA	NA
UHGV-2184301_40	Structural annotation	PF02588, PF10035, MF_01515, NF003191, COG1284	NA	NA
UHGV-2184301_41	eggNOG-mapper	1423767.BALU01000003_gene1195	NA	NA
UHGV-2184301_42	PHROG	phrog_19811	NA	unknown function
UHGV-2184301_42	eggNOG-mapper	891391.LAC30SC_06750	NA	NA