UHGV-2184309

Genome information

Genome length 25,563 bps

CDS count 25

Completeness 61.38% (medium-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-2184309
vOTU ID	vOTU-030992
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029862\|Ga0245308_100540\|provirus_3_25565
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.38
Jumbo phage	No

Genome content
Genome length	25,563 bps
GC content	49.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	90.39%
Average CDS length	925.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2184309_1	eggNOG-mapper	1211813.CAPH01000002_gene1135	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2184309_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2184309_2	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2184309_2	UniRef90	UniRef90_UPI000D103AB5	ATP-binding protein	NA
UHGV-2184309_2	eggNOG-mapper	1122931.AUAE01000005_gene3279	AAA domain	NA
UHGV-2184309_2	Pfam	PF13479	AAA domain	AAA_24
UHGV-2184309_2	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-2184309_2	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2184309_3	PHROG	phrog_35319	NA	unknown function
UHGV-2184309_3	UniRef90	UniRef90_UPI000D0F1C31	HNH endonuclease	NA
UHGV-2184309_3	eggNOG-mapper	762984.HMPREF9445_00148	NA	NA
UHGV-2184309_3	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-2184309_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2184309_5	UniRef90	UniRef90_UPI0008D9D600	recombination protein NinB	NA
UHGV-2184309_5	eggNOG-mapper	357276.EL88_08500	NA	NA
UHGV-2184309_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2184309_6	PHROG	phrog_26490	NA	unknown function
UHGV-2184309_6	eggNOG-mapper	411476.BACOVA_03887	NA	NA
UHGV-2184309_7	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2184309_7	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2184309_7	UniRef90	UniRef90_D1K9K1	Helicase C-terminal domain protein	NA
UHGV-2184309_7	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-2184309_7	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2184309_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2184309_7	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2184309_7	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2184309_8	PHROG	phrog_1934	NA	unknown function
UHGV-2184309_8	UniRef90	UniRef90_UPI0003030191	zinc-finger-containing protein	NA
UHGV-2184309_8	eggNOG-mapper	1120951.AUBG01000007_gene19	zinc-finger-containing domain	NA
UHGV-2184309_8	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-2184309_8	Structural annotation	PF11672	NA	NA
UHGV-2184309_9	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2184309_9	UniRef90	UniRef90_A0A4P8I8N3	DnaD domain protein	NA
UHGV-2184309_9	eggNOG-mapper	742767.HMPREF9456_03267	NA	NA
UHGV-2184309_9	Structural annotation	PF07120, COG3756	NA	NA
UHGV-2184309_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2184309_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2184309_10	UniRef90	UniRef90_UPI000E4C6BB1	replicative DNA helicase	NA
UHGV-2184309_10	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-2184309_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2184309_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2184309_10	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2184309_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-2184309_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2184309_12	eggNOG-mapper	679935.Alfi_0464	NA	NA
UHGV-2184309_13	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2184309_13	PHROG	phrog_14295	NA	unknown function
UHGV-2184309_13	UniRef90	UniRef90_UPI001E5DB762	phage tail tape measure protein	NA
UHGV-2184309_13	eggNOG-mapper	762982.HMPREF9442_01189	NA	NA
UHGV-2184309_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2184309_14	PHROG	phrog_6305	tail protein	tail
UHGV-2184309_14	UniRef90	UniRef90_C6ZA45	Putative phage tail component domain protein	NA
UHGV-2184309_14	eggNOG-mapper	1347393.HG726021_gene470	NA	NA
UHGV-2184309_14	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-2184309_15	Structural annotation	PF11320	NA	NA
UHGV-2184309_17	KOfam	K21498	higA-1; antitoxin HigA-1	NA
UHGV-2184309_17	PHROG	phrog_1381	plasmid antitoxin with HTH domain	moron, auxiliary metabolic gene and host takeover
UHGV-2184309_17	UniRef90	UniRef90_A0A316P0E1	Addiction module antidote protein, HigA family	NA
UHGV-2184309_17	eggNOG-mapper	1122971.BAME01000002_gene264	COG3093 Plasmid maintenance system antidote protein	NA
UHGV-2184309_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2184309_17	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-2184309_17	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2184309_17	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093	NA	NA
UHGV-2184309_18	KOfam	K07334	higB-1; toxin HigB-1	NA
UHGV-2184309_18	UniRef90	UniRef90_A0A379MSN8	Plasmid maintenance system killer protein	NA
UHGV-2184309_18	eggNOG-mapper	880526.KE386488_gene1638	Plasmid maintenance system killer protein	NA
UHGV-2184309_18	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-2184309_18	COG	COG3549	Plasmid maintenance system killer protein	NA
UHGV-2184309_18	Structural annotation	PF05015, TIGR00053, COG3549	NA	NA
UHGV-2184309_19	PHROG	phrog_17422	NA	unknown function
UHGV-2184309_19	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-2184309_19	COG	COG4926	Phage-related protein	NA
UHGV-2184309_22	PHROG	phrog_32423	NA	unknown function
UHGV-2184309_22	UniRef90	UniRef90_UPI0011DCF0C5	cell division protein ZapB	NA
UHGV-2184309_22	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-2184309_23	PHROG	phrog_1501	NA	unknown function
UHGV-2184309_23	UniRef90	UniRef90_A0A316NYW2	NA	NA
UHGV-2184309_23	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-2184309_23	Pfam	PF18925	NA	DUF5675
UHGV-2184309_23	Structural annotation	PF18925	NA	NA
UHGV-2184309_24	PHROG	phrog_26448	NA	unknown function
UHGV-2184309_24	UniRef90	UniRef90_A0A134B358	Fmp27_GFWDK domain-containing protein	NA
UHGV-2184309_24	eggNOG-mapper	742725.HMPREF9450_02132	NA	NA
UHGV-2184309_24	Pfam	PF20647	NA	DUF6808
UHGV-2184309_24	Structural annotation	PF20647	NA	NA