UHGV-2184435

Genome information

Genome length 26,486 bps

CDS count 37

Completeness 99.90% (high-quality)

geNomad score 0.9626

Prediction confidence Confident

Genome information
Genome ID	UHGV-2184435
vOTU ID	vOTU-008084
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029885\|Ga0245329_100096\|provirus_41524_78115
BioSample	SAMEA3449379
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9626
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32
Jumbo phage	No

Genome content
Genome length	26,486 bps
GC content	39.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.56%
Average CDS length	672.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2184435_1	KOfam	K14059	int; integrase	NA
UHGV-2184435_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2184435_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-2184435_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-2184435_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2184435_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2184435_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2184435_2	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-2184435_3	PHROG	phrog_1914	NA	unknown function
UHGV-2184435_3	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2184435_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2184435_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2184435_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2184435_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2184435_4	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-2184435_4	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-2184435_4	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-2184435_5	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-2184435_5	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-2184435_7	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2184435_7	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-2184435_7	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-2184435_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2184435_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2184435_7	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-2184435_8	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2184435_8	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2184435_8	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-2184435_8	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-2184435_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2184435_8	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2184435_8	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2184435_8	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2184435_9	PHROG	phrog_8684	NA	unknown function
UHGV-2184435_9	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-2184435_9	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-2184435_9	Pfam	PF09643	YopX protein	YopX
UHGV-2184435_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2184435_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2184435_10	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2184435_10	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-2184435_10	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2184435_10	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2184435_11	PHROG	phrog_6058	NA	unknown function
UHGV-2184435_11	Structural annotation	NF033787	NA	NA
UHGV-2184435_13	Structural annotation	PF19678, TIGR02610	NA	NA
UHGV-2184435_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2184435_16	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-2184435_16	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2184435_17	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-2184435_17	Structural annotation	TIGR01636	NA	NA
UHGV-2184435_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2184435_18	UniRef90	UniRef90_A0A373XNZ9	HNH endonuclease	NA
UHGV-2184435_18	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-2184435_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2184435_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2184435_19	PHROG	phrog_1066	NA	unknown function
UHGV-2184435_19	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-2184435_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2184435_20	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-2184435_20	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-2184435_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2184435_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2184435_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2184435_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2184435_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2184435_21	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-2184435_21	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-2184435_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2184435_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2184435_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2184435_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2184435_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2184435_22	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2184435_22	eggNOG-mapper	1396.DJ87_978	Clp protease	NA
UHGV-2184435_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2184435_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2184435_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2184435_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2184435_23	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-2184435_23	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-2184435_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2184435_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2184435_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2184435_24	PHROG	phrog_5223	neck protein	connector
UHGV-2184435_24	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-2184435_24	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-2184435_25	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2184435_25	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-2184435_25	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-2184435_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2184435_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2184435_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2184435_26	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-2184435_26	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-2184435_26	Structural annotation	TIGR01725	NA	NA
UHGV-2184435_27	Structural annotation	PF12691	NA	NA
UHGV-2184435_28	PHROG	phrog_885	major tail protein	tail
UHGV-2184435_28	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-2184435_28	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-2184435_28	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2184435_29	PHROG	phrog_1021	NA	unknown function
UHGV-2184435_31	PHROG	phrog_23464	NA	unknown function
UHGV-2184435_31	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-2184435_31	COG	COG5283	Phage-related tail protein	NA
UHGV-2184435_31	Structural annotation	COG3941	NA	NA
UHGV-2184435_32	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-2184435_32	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-2184435_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-2184435_32	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2184435_33	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2184435_33	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-2184435_33	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2184435_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2184435_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2184435_33	COG	COG4926	Phage-related protein	NA
UHGV-2184435_33	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2184435_34	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2184435_35	PHROG	phrog_1863	NA	unknown function
UHGV-2184435_35	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2184435_35	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2184435_36	PHROG	phrog_443	holin	lysis
UHGV-2184435_36	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-2184435_36	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-2184435_36	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2184435_36	Structural annotation	PF16945	NA	NA
UHGV-2184435_37	PHROG	phrog_18591	NA	unknown function
UHGV-2184435_37	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA