UHGV-2184488

Genome information

vOTU vOTU-062084

Genome length 20,095 bps

CDS count 28

Completeness 99.90% (high-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-2184488
vOTU ID	vOTU-062084
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029888\|Ga0245333_100143\|provirus_4269_24363
BioSample	SAMEA3449383
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.02
Jumbo phage	No

Genome content
Genome length	20,095 bps
GC content	38.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	83.10%
Average CDS length	597.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2184488_1	KOfam	K14059	int; integrase	NA
UHGV-2184488_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2184488_1	UniRef90	UniRef90_A0A173XJ70	Integrase	NA
UHGV-2184488_1	eggNOG-mapper	411459.RUMOBE_01402	Belongs to the 'phage' integrase family	NA
UHGV-2184488_1	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-2184488_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2184488_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2184488_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2184488_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2184488_8	eggNOG-mapper	411459.RUMOBE_01397	NA	NA
UHGV-2184488_9	UniRef90	UniRef90_A0A174ECN7	XRE family transcriptional regulator	NA
UHGV-2184488_9	eggNOG-mapper	767817.Desgi_2502	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2184488_10	PHROG	phrog_34504	NA	unknown function
UHGV-2184488_10	UniRef90	UniRef90_A0A1G9MNG4	Organiser of macrodomain of Terminus of chromosome	NA
UHGV-2184488_10	eggNOG-mapper	563038.HMPREF0851_00256	NA	NA
UHGV-2184488_11	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2184488_11	UniRef90	UniRef90_A5ZQW4	Phage regulatory protein, Rha family	NA
UHGV-2184488_11	eggNOG-mapper	411459.RUMOBE_01391	NA	NA
UHGV-2184488_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2184488_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2184488_11	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2184488_11	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2184488_12	UniRef90	UniRef90_UPI0009C032EA	helix-turn-helix domain-containing protein	NA
UHGV-2184488_12	eggNOG-mapper	411459.RUMOBE_01390	NA	NA
UHGV-2184488_13	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2184488_13	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-2184488_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2184488_14	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-2184488_15	PHROG	phrog_28918	NA	unknown function
UHGV-2184488_15	UniRef90	UniRef90_A0A174LLY7	Phage-related protein	NA
UHGV-2184488_15	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2184488_15	COG	COG5412	Phage-related protein	NA
UHGV-2184488_16	PHROG	phrog_706	NA	unknown function
UHGV-2184488_16	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-2184488_16	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2184488_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2184488_16	Structural annotation	PF06854	NA	NA
UHGV-2184488_17	PHROG	phrog_11299	NA	unknown function
UHGV-2184488_17	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2184488_17	Structural annotation	PF10666	NA	NA
UHGV-2184488_19	eggNOG-mapper	397291.C804_06335	NA	NA
UHGV-2184488_21	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2184488_21	UniRef90	UniRef90_A0A414IZC5	Toprim domain-containing protein	NA
UHGV-2184488_21	eggNOG-mapper	397290.C810_05176	Virulence-associated protein E	NA
UHGV-2184488_21	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2184488_21	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2184488_21	Structural annotation	PF05272, PF12965, MF_04154, NF005477, COG5545, COG4643	NA	NA
UHGV-2184488_22	eggNOG-mapper	1298920.KI911353_gene2059	NA	NA
UHGV-2184488_22	Structural annotation	PF08220, TIGR00122, COG1654	NA	NA
UHGV-2184488_23	eggNOG-mapper	1235798.C817_05064	NA	NA
UHGV-2184488_23	Structural annotation	PF20063, NF033787, COG3311	NA	NA
UHGV-2184488_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2184488_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2184488_24	UniRef90	UniRef90_A0A1C5UC10	Transcriptional repressor DicA	NA
UHGV-2184488_24	eggNOG-mapper	1408415.JHXL01000003_gene1118	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2184488_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2184488_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2184488_25	UniRef90	UniRef90_A0A414I3F2	Haloacid dehalogenase-like hydrolase	NA
UHGV-2184488_25	eggNOG-mapper	754027.HMPREF9554_02409	Phosphoserine phosphatase	NA
UHGV-2184488_25	COG	COG0560	Phosphoserine phosphatase	NA
UHGV-2184488_25	Structural annotation	PF06888, MF_01680, TIGR00338, COG0560	NA	NA
UHGV-2184488_26	UniRef90	UniRef90_UPI001D066CD9	HEPN family nuclease	NA
UHGV-2184488_26	Pfam	PF18736	HEPN pEK499 p136	pEK499_p136
UHGV-2184488_27	Structural annotation	PF02701	NA	NA
UHGV-2184488_28	UniRef90	UniRef90_A0A417R2Z8	Antitoxin	NA
UHGV-2184488_28	eggNOG-mapper	1121115.AXVN01000001_gene1091	conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	NA
UHGV-2184488_28	COG	COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	NA