UHGV-2186170

Genome information

Genome length 33,404 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9607

Prediction confidence Confident

Genome information
Genome ID	UHGV-2186170
vOTU ID	vOTU-070009
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030441\|Ga0168806_100703\|provirus_1457_42769
BioSample	SAMEA2737787
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9607
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.42
Jumbo phage	No

Genome content
Genome length	33,404 bps
GC content	55.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	86.37%
Average CDS length	579.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2186170_1	KOfam	K14059	int; integrase	NA
UHGV-2186170_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2186170_1	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-2186170_1	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-2186170_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2186170_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2186170_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2186170_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2186170_2	eggNOG-mapper	1507.HMPREF0262_01197	NA	NA
UHGV-2186170_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2186170_3	UniRef90	UniRef90_E2ZI86	Abi-like protein	NA
UHGV-2186170_3	eggNOG-mapper	748224.HMPREF9436_01377	Abi-like protein	NA
UHGV-2186170_3	PADLOC	AbiD	AbiD	Abi
UHGV-2186170_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2186170_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2186170_3	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2186170_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2186170_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2186170_5	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-2186170_5	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-2186170_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2186170_5	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2186170_6	Pfam	PF05973	NA	Gp49
UHGV-2186170_6	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-2186170_7	Structural annotation	PF21227	NA	NA
UHGV-2186170_8	PHROG	phrog_14275	NA	unknown function
UHGV-2186170_8	UniRef90	UniRef90_A0A6H3LV81	Zinc ribbon domain-containing protein	NA
UHGV-2186170_8	eggNOG-mapper	1111121.HMPREF1247_0552	NA	NA
UHGV-2186170_8	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-2186170_8	Structural annotation	PF07233, NF038353, COG5633	NA	NA
UHGV-2186170_9	PHROG	phrog_1914	NA	unknown function
UHGV-2186170_9	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2186170_9	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2186170_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2186170_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2186170_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2186170_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2186170_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2186170_10	UniRef90	UniRef90_A0A8J8SBC4	Helix-turn-helix transcriptional regulator	NA
UHGV-2186170_10	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-2186170_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2186170_10	Pfam	PF15731	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MqsA_antitoxin
UHGV-2186170_10	NCBIFam	TIGR03830.1	type II TA system antitoxin MqsA family protein	NA
UHGV-2186170_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2186170_10	Structural annotation	PF01381, PF21291, NF041951, TIGR02607, COG3655, COG1476	NA	NA
UHGV-2186170_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2186170_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2186170_11	UniRef90	UniRef90_UPI00196103FC	helix-turn-helix transcriptional regulator	NA
UHGV-2186170_11	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-2186170_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2186170_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2186170_11	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-2186170_12	UniRef90	UniRef90_A0A851IK81	Helix-turn-helix transcriptional regulator	NA
UHGV-2186170_12	eggNOG-mapper	1235796.C815_00951	NA	NA
UHGV-2186170_12	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2186170_12	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2186170_16	PHROG	phrog_750	NA	unknown function
UHGV-2186170_16	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2186170_17	PHROG	phrog_585	NA	unknown function
UHGV-2186170_17	Pfam	PF10711	NA	DUF2513
UHGV-2186170_19	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2186170_19	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2186170_19	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2186170_19	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-2186170_19	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2186170_19	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2186170_19	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2186170_19	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2186170_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2186170_22	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2186170_22	Structural annotation	PF21578	NA	NA
UHGV-2186170_23	KOfam	K03700	recU; recombination protein U	NA
UHGV-2186170_23	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2186170_23	UniRef90	UniRef90_A0A101WC48	Holliday junction resolvase RecU	NA
UHGV-2186170_23	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2186170_23	Pfam	PF03838	Recombination protein U	RecU
UHGV-2186170_23	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2186170_23	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2186170_24	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2186170_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2186170_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2186170_25	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2186170_25	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2186170_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2186170_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2186170_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2186170_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2186170_26	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2186170_26	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2186170_26	UniRef90	UniRef90_R0BQA7	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2186170_26	eggNOG-mapper	176090.SSIN_1153	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2186170_26	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2186170_26	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2186170_26	COG	COG0338	DNA-adenine methylase	NA
UHGV-2186170_27	PHROG	phrog_5781	NA	unknown function
UHGV-2186170_27	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-2186170_27	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2186170_27	Pfam	PF14359	NA	DUF4406
UHGV-2186170_27	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2186170_27	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2186170_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2186170_28	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-2186170_28	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2186170_28	Pfam	PF07374	NA	DUF1492
UHGV-2186170_28	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2186170_29	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2186170_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2186170_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2186170_30	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2186170_30	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2186170_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2186170_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2186170_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2186170_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2186170_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2186170_30	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2186170_31	PHROG	phrog_1233	NA	unknown function
UHGV-2186170_31	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2186170_31	Structural annotation	PF13058	NA	NA
UHGV-2186170_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-2186170_32	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2186170_32	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2186170_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2186170_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2186170_33	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2186170_33	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2186170_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2186170_33	COG	COG2369	NA	NA
UHGV-2186170_33	Structural annotation	PF06152	NA	NA
UHGV-2186170_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2186170_34	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2186170_34	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-2186170_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2186170_34	Structural annotation	PF06810	NA	NA
UHGV-2186170_35	PHROG	phrog_267	major head protein	head and packaging
UHGV-2186170_35	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2186170_35	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2186170_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2186170_36	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-2186170_37	PHROG	phrog_3366	NA	unknown function
UHGV-2186170_37	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2186170_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2186170_38	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2186170_38	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2186170_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2186170_38	Structural annotation	PF11114	NA	NA
UHGV-2186170_39	PHROG	phrog_3266	tail completion	connector
UHGV-2186170_39	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2186170_39	Structural annotation	PF12691	NA	NA
UHGV-2186170_40	PHROG	phrog_3099	NA	unknown function
UHGV-2186170_40	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2186170_40	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2186170_41	PHROG	phrog_11299	NA	unknown function
UHGV-2186170_41	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2186170_41	Structural annotation	PF10666	NA	NA
UHGV-2186170_42	PHROG	phrog_706	NA	unknown function
UHGV-2186170_42	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2186170_42	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2186170_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2186170_42	Structural annotation	PF06854	NA	NA
UHGV-2186170_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2186170_43	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2186170_43	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-2186170_43	COG	COG1511	NA	NA
UHGV-2186170_43	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-2186170_44	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2186170_45	PHROG	phrog_6616	tail protein	tail
UHGV-2186170_46	Structural annotation	PF20622, NF033814	NA	NA
UHGV-2186170_47	eggNOG-mapper	658088.HMPREF0987_01102	Ami_2	NA
UHGV-2186170_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2186170_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2186170_48	PHROG	phrog_9611	endolysin	lysis
UHGV-2186170_48	UniRef90	UniRef90_A0A3D1VCL7	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	NA
UHGV-2186170_48	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-2186170_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2186170_48	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2186170_48	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2186170_49	PHROG	phrog_199	holin	lysis
UHGV-2186170_49	UniRef90	UniRef90_A0A3D1VF24	Holin	NA
UHGV-2186170_49	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-2186170_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2186170_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2186170_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2186170_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2186170_50	PHROG	phrog_199	holin	lysis
UHGV-2186170_50	UniRef90	UniRef90_R5AQ05	Toxin secretion/phage lysis holin	NA
UHGV-2186170_50	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-2186170_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2186170_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2186170_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2186170_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA