UHGV-2186226

Genome information

vOTU vOTU-019417

Genome length 27,363 bps

CDS count 50

Completeness 75.80% (medium-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-2186226
vOTU ID	vOTU-019417
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030444\|Ga0168855_100234\|provirus_35049_67763
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.6
Jumbo phage	No

Genome content
Genome length	27,363 bps
GC content	47.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.31%
Average CDS length	507.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2186226_9	Structural annotation	PF01381, NF041575, COG1476	NA	NA
UHGV-2186226_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2186226_10	UniRef90	UniRef90_A0A350TVJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-2186226_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2186226_10	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2186226_11	PHROG	phrog_7445	NA	unknown function
UHGV-2186226_11	UniRef90	UniRef90_A0A4R2RNJ6	PcfK-like protein	NA
UHGV-2186226_11	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2186226_11	Structural annotation	PF14058	NA	NA
UHGV-2186226_12	PHROG	phrog_8470	NA	unknown function
UHGV-2186226_12	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-2186226_12	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-2186226_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2186226_12	Structural annotation	PF14284	NA	NA
UHGV-2186226_13	PHROG	phrog_15609	NA	unknown function
UHGV-2186226_13	UniRef90	UniRef90_UPI001875FF23	NA	NA
UHGV-2186226_13	eggNOG-mapper	1007096.BAGW01000031_gene118	NA	NA
UHGV-2186226_13	Pfam	PF11300	NA	DUF3102
UHGV-2186226_13	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2186226_13	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2186226_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2186226_15	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-2186226_15	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-2186226_15	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2186226_16	PHROG	phrog_7566	NA	unknown function
UHGV-2186226_16	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2186226_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2186226_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2186226_19	UniRef90	UniRef90_A0A352UR43	Single-stranded DNA-binding protein	NA
UHGV-2186226_19	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2186226_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2186226_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2186226_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2186226_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2186226_20	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-2186226_21	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-2186226_23	PHROG	phrog_4292	NA	unknown function
UHGV-2186226_23	eggNOG-mapper	485916.Dtox_4212	NA	NA
UHGV-2186226_24	PHROG	phrog_11237	NA	unknown function
UHGV-2186226_24	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-2186226_25	UniRef90	UniRef90_A0A1M6U056	Helix-turn-helix domain-containing protein	NA
UHGV-2186226_25	eggNOG-mapper	1232447.BAHW02000027_gene1846	Helix-turn-helix XRE-family like proteins	NA
UHGV-2186226_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2186226_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2186226_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2186226_27	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-2186226_27	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-2186226_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2186226_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2186226_28	PHROG	phrog_1066	NA	unknown function
UHGV-2186226_28	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2186226_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2186226_29	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-2186226_29	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-2186226_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2186226_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2186226_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2186226_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2186226_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2186226_30	UniRef90	UniRef90_A0A1T4XJH4	Phage portal protein, HK97 family	NA
UHGV-2186226_30	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-2186226_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2186226_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2186226_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2186226_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2186226_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2186226_31	UniRef90	UniRef90_A0A350TW16	Peptidase (Fragment)	NA
UHGV-2186226_31	eggNOG-mapper	1033738.CAEP01000167_gene3589	Serine dehydrogenase proteinase	NA
UHGV-2186226_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2186226_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2186226_31	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2186226_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-2186226_32	UniRef90	UniRef90_A0A350TW17	Phage major capsid protein (Fragment)	NA
UHGV-2186226_32	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-2186226_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2186226_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2186226_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2186226_33	PHROG	phrog_5223	neck protein	connector
UHGV-2186226_33	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-2186226_33	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-2186226_33	Structural annotation	TIGR01560	NA	NA
UHGV-2186226_34	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2186226_34	UniRef90	UniRef90_UPI000BF0079F	phage head closure protein	NA
UHGV-2186226_34	eggNOG-mapper	1033738.CAEP01000018_gene3675	head-tail adaptor	NA
UHGV-2186226_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2186226_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2186226_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2186226_35	UniRef90	UniRef90_A0A7V7BBM4	HK97 gp10 family phage protein	NA
UHGV-2186226_35	eggNOG-mapper	1123314.AUIO01000016_gene844	NA	NA
UHGV-2186226_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2186226_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2186226_36	PHROG	phrog_78	tail terminator	connector
UHGV-2186226_36	UniRef90	UniRef90_E7GJW4	Prophage pi2 protein 38	NA
UHGV-2186226_36	eggNOG-mapper	877414.ATWA01000019_gene2044	NA	NA
UHGV-2186226_36	Structural annotation	PF20765	NA	NA
UHGV-2186226_37	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2186226_37	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-2186226_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2186226_38	eggNOG-mapper	1280689.AUJC01000007_gene3310	NA	NA
UHGV-2186226_38	Structural annotation	PF17388	NA	NA
UHGV-2186226_39	eggNOG-mapper	1121423.JONT01000041_gene954	NA	NA
UHGV-2186226_40	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2186226_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2186226_40	UniRef90	UniRef90_A0A350TW28	Phage tail tape measure protein	NA
UHGV-2186226_40	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-2186226_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2186226_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2186226_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2186226_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2186226_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2186226_41	UniRef90	UniRef90_A0A350TW29	Phage tail protein	NA
UHGV-2186226_41	eggNOG-mapper	1414720.CBYM010000005_gene1383	tail component	NA
UHGV-2186226_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2186226_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-2186226_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2186226_42	PHROG	phrog_863	tail fiber assembly	tail
UHGV-2186226_42	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-2186226_42	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-2186226_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2186226_42	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2186226_42	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2186226_42	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-2186226_44	PHROG	phrog_2310	NA	unknown function
UHGV-2186226_44	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-2186226_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2186226_45	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-2186226_45	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-2186226_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2186226_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2186226_45	COG	COG4926	Phage-related protein	NA
UHGV-2186226_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2186226_46	PHROG	phrog_937	hemolysin	other
UHGV-2186226_46	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2186226_48	PHROG	phrog_36029	NA	unknown function
UHGV-2186226_48	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-2186226_48	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-2186226_49	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2186226_49	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-2186226_49	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-2186226_49	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2186226_49	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-2186226_50	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2186226_50	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2186226_50	UniRef90	UniRef90_J5UJ89	D12 class N6 adenine-specific DNA methyltransferase domain protein (Fragment)	NA
UHGV-2186226_50	eggNOG-mapper	1121342.AUCO01000012_gene1659	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2186226_50	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-2186226_50	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2186226_50	COG	COG0338	DNA-adenine methylase	NA