UHGV-2187471

Genome information

Genome length 29,967 bps

CDS count 42

Completeness 67.65% (medium-quality)

geNomad score 0.9570

Prediction confidence Confident

Genome information
Genome ID	UHGV-2187471
vOTU ID	vOTU-024378
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030032\|Ga0245332_100423\|provirus_44253_74219
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9570
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.9
Jumbo phage	No

Genome content
Genome length	29,967 bps
GC content	42.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	87.39%
Average CDS length	629.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2187471_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2187471_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2187471_1	UniRef90	UniRef90_W0EQW7	Replicative DNA helicase	NA
UHGV-2187471_1	eggNOG-mapper	742726.HMPREF9448_01056	Participates in initiation and elongation during chromosome replication	NA
UHGV-2187471_1	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2187471_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2187471_1	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2187471_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-2187471_1	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2187471_3	KOfam	K07082	K07082; UPF0755 protein	NA
UHGV-2187471_3	UniRef90	UniRef90_K0XA14	Endolytic murein transglycosylase	NA
UHGV-2187471_3	eggNOG-mapper	742726.HMPREF9448_01054	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	NA
UHGV-2187471_3	Pfam	PF02618	YceG-like family	YceG
UHGV-2187471_3	NCBIFam	TIGR00247.1	endolytic transglycosylase MltG	NA
UHGV-2187471_3	COG	COG1559	Endolytic transglycosylase MltG, terminates peptidoglycan polymerization	NA
UHGV-2187471_3	HAMAP	MF_02065	Endolytic murein transglycosylase [mltG]	NA
UHGV-2187471_4	UniRef90	UniRef90_UPI000623B17C	helix-turn-helix domain-containing protein	NA
UHGV-2187471_4	Structural annotation	PF01381, TIGR03070, COG1813	NA	NA
UHGV-2187471_10	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-2187471_11	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2187471_13	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2187471_13	PHROG	phrog_894	endolysin	lysis
UHGV-2187471_13	UniRef90	UniRef90_UPI0018977466	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-2187471_13	eggNOG-mapper	1105171.H2A0C2_9CAUD	zinc D-Ala-D-Ala carboxypeptidase activity	NA
UHGV-2187471_13	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2187471_13	Structural annotation	PF08291, COG3108	NA	NA
UHGV-2187471_15	UniRef90	UniRef90_UPI0010756222	MgtC/SapB family protein	NA
UHGV-2187471_16	PHROG	phrog_1281	NA	unknown function
UHGV-2187471_16	UniRef90	UniRef90_A0A4S2FP91	NA	NA
UHGV-2187471_16	eggNOG-mapper	393921.HQ45_06855	Phage-associated protein	NA
UHGV-2187471_16	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2187471_16	COG	COG3600	NA	NA
UHGV-2187471_16	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2187471_17	Structural annotation	PF04892, NF008028, COG5544	NA	NA
UHGV-2187471_18	PHROG	phrog_19698	NA	unknown function
UHGV-2187471_18	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-2187471_19	eggNOG-mapper	1203611.KB894547_gene2599	NA	NA
UHGV-2187471_20	Structural annotation	PF13360, MF_03022, NF008258, COG1520	NA	NA
UHGV-2187471_21	Structural annotation	PF21226	NA	NA
UHGV-2187471_22	PHROG	phrog_24616	NA	unknown function
UHGV-2187471_22	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-2187471_22	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-2187471_22	Structural annotation	PF20459	NA	NA
UHGV-2187471_23	PHROG	phrog_11226	portal protein	head and packaging
UHGV-2187471_23	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-2187471_23	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-2187471_24	PHROG	phrog_37138	NA	unknown function
UHGV-2187471_24	eggNOG-mapper	357276.EL88_08360	NA	NA
UHGV-2187471_25	PHROG	phrog_21217	NA	unknown function
UHGV-2187471_25	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-2187471_26	PHROG	phrog_38780	NA	unknown function
UHGV-2187471_26	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-2187471_26	eggNOG-mapper	357276.EL88_08370	NA	NA
UHGV-2187471_26	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-2187471_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2187471_27	PHROG	phrog_33547	NA	unknown function
UHGV-2187471_27	UniRef90	UniRef90_UPI00189FE8C2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2187471_27	eggNOG-mapper	1236514.BAKL01000015_gene1626	Clp protease	NA
UHGV-2187471_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2187471_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2187471_30	PHROG	phrog_1086	NA	unknown function
UHGV-2187471_30	UniRef90	UniRef90_A0A3N2KH24	NA	NA
UHGV-2187471_30	eggNOG-mapper	742726.HMPREF9448_02001	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-2187471_30	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-2187471_30	Structural annotation	PF10902	NA	NA
UHGV-2187471_32	UniRef90	UniRef90_UPI0018A12243	helix-turn-helix domain-containing protein	NA
UHGV-2187471_32	eggNOG-mapper	445970.ALIPUT_01205	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2187471_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2187471_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2187471_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2187471_33	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-2187471_33	PHROG	phrog_11900	NA	unknown function
UHGV-2187471_33	UniRef90	UniRef90_K0X6M8	Fido domain-containing protein	NA
UHGV-2187471_33	eggNOG-mapper	742726.HMPREF9448_02005	Fic/DOC family	NA
UHGV-2187471_33	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2187471_33	COG	COG3177	Fic family protein	NA
UHGV-2187471_33	Structural annotation	PF02661, TIGR02613, COG3177	NA	NA
UHGV-2187471_34	eggNOG-mapper	906968.Trebr_1128	NA	NA
UHGV-2187471_36	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2187471_36	UniRef90	UniRef90_UPI00189DC102	helix-turn-helix domain containing protein	NA
UHGV-2187471_36	eggNOG-mapper	1347393.HG726021_gene371	Helix-turn-helix of insertion element transposase	NA
UHGV-2187471_36	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-2187471_36	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2187471_36	Structural annotation	PF07141	NA	NA
UHGV-2187471_37	PHROG	phrog_33698	NA	unknown function
UHGV-2187471_37	eggNOG-mapper	1236514.BAKL01000015_gene1630	NA	NA
UHGV-2187471_37	Structural annotation	NF033848, COG4379	NA	NA
UHGV-2187471_38	PHROG	phrog_37298	NA	unknown function
UHGV-2187471_38	UniRef90	UniRef90_A0A3A9H7G6	PhageMin_Tail domain-containing protein	NA
UHGV-2187471_38	eggNOG-mapper	762984.HMPREF9445_00173	domain protein	NA
UHGV-2187471_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2187471_38	COG	COG1511	NA	NA
UHGV-2187471_39	eggNOG-mapper	1077285.AGDG01000032_gene4175	NA	NA
UHGV-2187471_40	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2187471_40	UniRef90	UniRef90_UPI0018A0FFAA	VRR-NUC domain-containing protein	NA
UHGV-2187471_40	eggNOG-mapper	1410624.JNKK01000051_gene2467	VRR_NUC	NA
UHGV-2187471_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2187471_40	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2187471_41	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2187471_41	UniRef90	UniRef90_A0A5J4S3Q1	SNF2-rel_dom domain-containing protein	NA
UHGV-2187471_41	eggNOG-mapper	471870.BACINT_02219	helicase activity	NA
UHGV-2187471_41	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2187471_41	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2187471_41	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA