UHGV-2189103

Genome information

Genome length 33,105 bps

CDS count 46

Completeness 90.51% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-2189103
vOTU ID	vOTU-070179
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030381\|Ga0167499_1000347\|provirus_3_33107
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.67
Jumbo phage	No

Genome content
Genome length	33,105 bps
GC content	50.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.22%
Average CDS length	674.67 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2189103_1	Structural annotation	PF10651, NF009453	NA	NA
UHGV-2189103_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2189103_3	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-2189103_3	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2189103_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2189103_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2189103_3	COG	COG4926	Phage-related protein	NA
UHGV-2189103_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2189103_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2189103_4	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-2189103_4	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-2189103_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-2189103_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2189103_5	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2189103_5	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-2189103_5	eggNOG-mapper	1216932.CM240_1382	tape measure	NA
UHGV-2189103_5	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2189103_5	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-2189103_6	Structural annotation	PF11836	NA	NA
UHGV-2189103_7	PHROG	phrog_88	major tail protein	tail
UHGV-2189103_7	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-2189103_7	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2189103_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2189103_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2189103_8	PHROG	phrog_78	tail terminator	connector
UHGV-2189103_8	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-2189103_8	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2189103_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2189103_9	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-2189103_9	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-2189103_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2189103_9	Structural annotation	TIGR01725	NA	NA
UHGV-2189103_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2189103_10	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-2189103_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2189103_11	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2189103_11	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-2189103_11	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-2189103_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2189103_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2189103_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2189103_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-2189103_12	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-2189103_12	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-2189103_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2189103_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2189103_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2189103_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2189103_13	PHROG	phrog_16951	NA	unknown function
UHGV-2189103_13	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-2189103_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2189103_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-2189103_14	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-2189103_14	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-2189103_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2189103_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2189103_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2189103_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2189103_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2189103_15	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-2189103_15	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-2189103_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2189103_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2189103_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2189103_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2189103_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2189103_16	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-2189103_16	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-2189103_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2189103_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2189103_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2189103_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2189103_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2189103_17	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-2189103_17	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-2189103_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2189103_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2189103_17	Structural annotation	PF05766	NA	NA
UHGV-2189103_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2189103_18	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-2189103_18	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2189103_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2189103_18	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2189103_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2189103_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2189103_19	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2189103_19	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2189103_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2189103_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2189103_20	PHROG	phrog_13321	NA	unknown function
UHGV-2189103_20	UniRef90	UniRef90_UPI00030D2C45	radical SAM protein	NA
UHGV-2189103_20	eggNOG-mapper	1235797.C816_03559	PFAM Radical SAM	NA
UHGV-2189103_20	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2189103_20	COG	COG1533	DNA repair photolyase	NA
UHGV-2189103_20	Structural annotation	PF20903, MF_00917, NF033668, COG4422	NA	NA
UHGV-2189103_21	PHROG	phrog_8684	NA	unknown function
UHGV-2189103_21	UniRef90	UniRef90_UPI0018F4C450	YopX family protein	NA
UHGV-2189103_21	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-2189103_21	Pfam	PF09643	YopX protein	YopX
UHGV-2189103_25	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2189103_25	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2189103_25	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-2189103_25	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-2189103_25	Pfam	PF00692	dUTPase	dUTPase
UHGV-2189103_25	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-2189103_25	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2189103_25	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-2189103_27	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2189103_27	UniRef90	UniRef90_S1N930	Phage replication initiation protein	NA
UHGV-2189103_27	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-2189103_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2189103_27	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2189103_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2189103_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2189103_28	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-2189103_28	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-2189103_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2189103_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2189103_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2189103_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2189103_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2189103_30	PHROG	phrog_7566	NA	unknown function
UHGV-2189103_30	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-2189103_31	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2189103_31	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2189103_31	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2189103_31	Structural annotation	PF05772	NA	NA
UHGV-2189103_32	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2189103_32	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-2189103_32	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-2189103_32	Pfam	PF06378	NA	DUF1071
UHGV-2189103_32	Structural annotation	PF06378, COG4712	NA	NA
UHGV-2189103_34	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-2189103_34	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-2189103_34	UniRef90	UniRef90_A0A358WYE5	Beta sliding clamp	NA
UHGV-2189103_34	eggNOG-mapper	1105031.HMPREF1141_2306	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-2189103_34	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-2189103_34	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-2189103_34	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-2189103_34	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-2189103_34	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-2189103_34	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-2189103_35	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2189103_35	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2189103_35	UniRef90	UniRef90_UPI001C39E2EC	DNA methylase N-4	NA
UHGV-2189103_35	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-2189103_35	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2189103_35	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2189103_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2189103_35	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2189103_35	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2189103_39	PHROG	phrog_18750	NA	unknown function
UHGV-2189103_39	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-2189103_39	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2189103_41	PHROG	phrog_6058	NA	unknown function
UHGV-2189103_41	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-2189103_42	UniRef90	UniRef90_R6I666	Putative cro repressor	NA
UHGV-2189103_42	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-2189103_42	Pfam	PF05339	NA	DUF739
UHGV-2189103_42	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2189103_42	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2189103_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2189103_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2189103_43	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-2189103_43	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-2189103_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2189103_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2189103_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2189103_43	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2189103_44	eggNOG-mapper	537007.BLAHAN_07167	NA	NA
UHGV-2189103_44	AcrCatalog	cluster_27895	NA	NA
UHGV-2189103_45	KOfam	K14059	int; integrase	NA
UHGV-2189103_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2189103_45	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-2189103_45	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-2189103_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2189103_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2189103_45	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2189103_46	KOfam	K05989	ramA; alpha-L-rhamnosidase [EC:3.2.1.40]	NA
UHGV-2189103_46	UniRef90	UniRef90_R6I886	Alpha-L-rhamnosidase	NA
UHGV-2189103_46	eggNOG-mapper	180332.JTGN01000005_gene2979	Alpha-L-rhamnosidase N-terminal domain protein	NA
UHGV-2189103_46	Pfam	PF08531	Alpha-L-rhamnosidase N-terminal domain	Bac_rhamnosid_N
UHGV-2189103_46	Pfam	PF05592	Bacterial alpha-L-rhamnosidase concanavalin-like domain	Bac_rhamnosid
UHGV-2189103_46	Pfam	PF17389	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	Bac_rhamnosid6H
UHGV-2189103_46	Pfam	PF17390	Bacterial alpha-L-rhamnosidase C-terminal domain	Bac_rhamnosid_C
UHGV-2189103_46	COG	COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	NA