UHGV-2189287

Genome information

Genome length 33,250 bps

CDS count 53

Completeness 99.59% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-2189287
vOTU ID	vOTU-064294
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030320\|Ga0244994_101292
BioSample	SAMEA3708838
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.65
Jumbo phage	No

Genome content
Genome length	33,250 bps
GC content	45.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.56%
Average CDS length	565.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2189287_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2189287_4	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-2189287_4	eggNOG-mapper	883112.HMPREF9707_01621	NA	NA
UHGV-2189287_4	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2189287_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2189287_4	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2189287_11	PHROG	phrog_10714	NA	unknown function
UHGV-2189287_11	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-2189287_11	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-2189287_13	PHROG	phrog_22543	NA	unknown function
UHGV-2189287_14	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2189287_14	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-2189287_14	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2189287_18	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2189287_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2189287_18	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-2189287_18	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-2189287_18	Pfam	PF06745	KaiC	ATPase
UHGV-2189287_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-2189287_18	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-2189287_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2189287_19	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-2189287_19	eggNOG-mapper	1348583.ATLH01000031_gene1927	DnaD domain protein	NA
UHGV-2189287_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2189287_19	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-2189287_20	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2189287_20	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-2189287_20	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-2189287_20	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2189287_20	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-2189287_20	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-2189287_21	PHROG	phrog_18107	NA	unknown function
UHGV-2189287_21	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-2189287_21	Structural annotation	PF05037	NA	NA
UHGV-2189287_23	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2189287_23	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-2189287_23	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-2189287_23	Pfam	PF13479	AAA domain	AAA_24
UHGV-2189287_23	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2189287_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2189287_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2189287_29	UniRef90	UniRef90_A0A290FZK7	Roantirepressor	NA
UHGV-2189287_29	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-2189287_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2189287_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2189287_29	COG	COG3617	Prophage antirepressor	NA
UHGV-2189287_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2189287_30	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-2189287_30	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2189287_30	UniRef90	UniRef90_A0A412AWF5	Helix-turn-helix domain-containing protein	NA
UHGV-2189287_30	eggNOG-mapper	1519439.JPJG01000077_gene919	Helix-turn-helix domain	NA
UHGV-2189287_30	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2189287_30	Structural annotation	PF04218	NA	NA
UHGV-2189287_31	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-2189287_31	PHROG	phrog_4646	transposase	integration and excision
UHGV-2189287_31	UniRef90	UniRef90_R6N1U4	Integrase catalytic domain-containing protein	NA
UHGV-2189287_31	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-2189287_31	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2189287_31	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-2189287_31	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-2189287_31	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-2189287_32	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-2189287_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2189287_33	UniRef90	UniRef90_R6P7W0	Helix-turn-helix domain-containing protein	NA
UHGV-2189287_33	eggNOG-mapper	1235797.C816_02851	Helix-turn-helix XRE-family like proteins	NA
UHGV-2189287_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2189287_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2189287_33	Structural annotation	PF13560, NF041951, COG1813	NA	NA
UHGV-2189287_34	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-2189287_34	PHROG	phrog_10292	NA	unknown function
UHGV-2189287_34	UniRef90	UniRef90_R6NCF6	TM2 domain-containing protein	NA
UHGV-2189287_34	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-2189287_34	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2189287_34	Pfam	PF05154	TM2 domain	TM2
UHGV-2189287_34	COG	COG2314	NA	NA
UHGV-2189287_35	PHROG	phrog_297	holin	lysis
UHGV-2189287_35	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-2189287_35	eggNOG-mapper	428125.CLOLEP_01780	COG COG5546 Small integral membrane protein	NA
UHGV-2189287_35	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2189287_35	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2189287_35	COG	COG5546	NA	NA
UHGV-2189287_35	Structural annotation	COG5546	NA	NA
UHGV-2189287_36	PHROG	phrog_1863	NA	unknown function
UHGV-2189287_36	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-2189287_36	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-2189287_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2189287_37	PHROG	phrog_3088	amidase	lysis
UHGV-2189287_37	UniRef90	UniRef90_A0A412AXM4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2189287_37	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2189287_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2189287_37	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2189287_37	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2189287_38	PHROG	phrog_7121	tail fiber protein	tail
UHGV-2189287_38	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-2189287_38	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-2189287_38	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2189287_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2189287_38	Structural annotation	PF10651	NA	NA
UHGV-2189287_39	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2189287_39	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-2189287_39	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2189287_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2189287_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2189287_39	COG	COG4926	Phage-related protein	NA
UHGV-2189287_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2189287_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2189287_40	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-2189287_40	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2189287_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-2189287_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2189287_41	PHROG	phrog_23464	NA	unknown function
UHGV-2189287_41	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-2189287_41	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-2189287_41	COG	COG5412	Phage-related protein	NA
UHGV-2189287_41	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-2189287_42	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2189287_42	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-2189287_42	eggNOG-mapper	1291743.LOSG293_110580	NA	NA
UHGV-2189287_42	Structural annotation	PF17375	NA	NA
UHGV-2189287_43	PHROG	phrog_709	NA	unknown function
UHGV-2189287_43	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-2189287_43	Structural annotation	PF11836	NA	NA
UHGV-2189287_44	PHROG	phrog_88	major tail protein	tail
UHGV-2189287_44	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-2189287_44	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-2189287_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2189287_44	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2189287_45	PHROG	phrog_78	tail terminator	connector
UHGV-2189287_45	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-2189287_45	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-2189287_45	Structural annotation	PF20765	NA	NA
UHGV-2189287_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2189287_46	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-2189287_46	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-2189287_46	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2189287_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2189287_47	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2189287_47	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-2189287_47	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-2189287_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2189287_48	PHROG	phrog_2550	NA	unknown function
UHGV-2189287_48	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-2189287_48	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-2189287_48	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2189287_49	PHROG	phrog_10	major head protein	head and packaging
UHGV-2189287_49	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2189287_49	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-2189287_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2189287_49	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2189287_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2189287_49	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2189287_49	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2189287_50	KOfam	K06904	NA	NA
UHGV-2189287_50	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2189287_50	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-2189287_50	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-2189287_50	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2189287_50	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2189287_50	COG	COG3740	Phage head maturation protease	NA
UHGV-2189287_50	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2189287_51	PHROG	phrog_12	portal protein	head and packaging
UHGV-2189287_51	UniRef90	UniRef90_A0A1C6H763	Phage portal protein, HK97 family	NA
UHGV-2189287_51	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-2189287_51	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2189287_51	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2189287_51	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2189287_51	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2189287_52	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2189287_52	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-2189287_52	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-2189287_52	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2189287_52	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2189287_52	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2189287_52	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2189287_53	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2189287_53	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-2189287_53	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-2189287_53	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2189287_53	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2189287_53	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA