UHGV-2189536

Genome information

vOTU vOTU-019088

Genome length 23,808 bps

CDS count 38

Completeness 68.82% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-2189536
vOTU ID	vOTU-019088
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300035645\|Ga0134409_00934
BioSample	SAMN03922485
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.47
Jumbo phage	No

Genome content
Genome length	23,808 bps
GC content	58.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	95.57%
Average CDS length	602.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2189536_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2189536_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2189536_1	UniRef90	UniRef90_UPI0002EC42B8	single-stranded DNA-binding protein	NA
UHGV-2189536_1	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-2189536_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2189536_3	UniRef90	UniRef90_U2R3A7	NA	NA
UHGV-2189536_3	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2189536_3	Structural annotation	PF04448	NA	NA
UHGV-2189536_5	PHROG	phrog_38832	NA	unknown function
UHGV-2189536_5	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-2189536_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2189536_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2189536_12	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-2189536_12	Structural annotation	PF01446, NF041486	NA	NA
UHGV-2189536_13	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-2189536_13	Structural annotation	PF14205	NA	NA
UHGV-2189536_14	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2189536_14	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-2189536_14	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-2189536_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2189536_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2189536_15	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-2189536_15	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-2189536_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2189536_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2189536_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2189536_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2189536_15	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-2189536_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-2189536_16	UniRef90	UniRef90_A0A8G1TPJ1	Phage portal protein	NA
UHGV-2189536_16	eggNOG-mapper	1235798.C817_04583	Phage portal protein, HK97 family	NA
UHGV-2189536_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2189536_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2189536_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2189536_16	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2189536_17	KOfam	K06904	NA	NA
UHGV-2189536_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2189536_17	UniRef90	UniRef90_A0A373ZF38	HK97 family phage prohead protease	NA
UHGV-2189536_17	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-2189536_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2189536_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2189536_17	COG	COG3740	Phage head maturation protease	NA
UHGV-2189536_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2189536_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-2189536_18	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-2189536_18	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-2189536_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2189536_18	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2189536_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2189536_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2189536_18	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2189536_19	eggNOG-mapper	908340.HMPREF9406_2576	NA	NA
UHGV-2189536_20	PHROG	phrog_19734	NA	unknown function
UHGV-2189536_20	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-2189536_20	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-2189536_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2189536_21	UniRef90	UniRef90_UPI001D00FAFD	HK97 gp10 family phage protein	NA
UHGV-2189536_21	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-2189536_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2189536_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2189536_22	PHROG	phrog_78	tail terminator	connector
UHGV-2189536_22	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-2189536_22	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2189536_23	PHROG	phrog_88	major tail protein	tail
UHGV-2189536_23	UniRef90	UniRef90_A0A1Y3R915	Phage tail protein	NA
UHGV-2189536_23	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-2189536_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2189536_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2189536_24	PHROG	phrog_709	NA	unknown function
UHGV-2189536_24	eggNOG-mapper	1226322.HMPREF1545_00122	NA	NA
UHGV-2189536_24	Structural annotation	PF11836	NA	NA
UHGV-2189536_25	PHROG	phrog_23464	NA	unknown function
UHGV-2189536_25	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-2189536_25	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-2189536_25	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2189536_25	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-2189536_26	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-2189536_26	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2189536_27	PHROG	phrog_32744	NA	unknown function
UHGV-2189536_27	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-2189536_27	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-2189536_29	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-2189536_29	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-2189536_29	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2189536_29	Structural annotation	PF10651, COG5456	NA	NA
UHGV-2189536_30	PHROG	phrog_13589	NA	unknown function
UHGV-2189536_30	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-2189536_30	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2189536_35	PHROG	phrog_4105	NA	unknown function
UHGV-2189536_35	eggNOG-mapper	1687.BCOR_0969	NA	NA
UHGV-2189536_36	PHROG	phrog_1129	holin	lysis
UHGV-2189536_36	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-2189536_36	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2189536_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2189536_36	Structural annotation	PF06946	NA	NA
UHGV-2189536_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2189536_38	PHROG	phrog_435	endolysin	lysis
UHGV-2189536_38	UniRef90	UniRef90_A0A373Q9Y2	NAGPA domain-containing protein	NA
UHGV-2189536_38	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2189536_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2189536_38	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-2189536_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2189536_38	Structural annotation	PF01520, PF09992, MF_00562, TIGR02883, COG0860, COG4632	NA	NA