UHGV-2190341

Genome information

vOTU vOTU-061961

Genome length 41,371 bps

CDS count 63

Completeness 91.84% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-2190341
vOTU ID	vOTU-061961
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030438\|Ga0168793_1000743
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.9
Jumbo phage	No

Genome content
Genome length	41,371 bps
GC content	40.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.56%
Average CDS length	597.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2190341_1	UniRef90	UniRef90_A0A395X7H2	XRE family transcriptional regulator	NA
UHGV-2190341_3	UniRef90	UniRef90_A0A3A6GQZ1	Zinc ribbon domain-containing protein	NA
UHGV-2190341_4	KOfam	K14059	int; integrase	NA
UHGV-2190341_4	PHROG	phrog_1	integrase	integration and excision
UHGV-2190341_4	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-2190341_4	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-2190341_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2190341_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2190341_4	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2190341_5	KOfam	K07273	acm; lysozyme	NA
UHGV-2190341_5	PHROG	phrog_6745	endolysin	lysis
UHGV-2190341_5	UniRef90	UniRef90_A0A173ZZ10	Lysozyme M1	NA
UHGV-2190341_5	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-2190341_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2190341_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-2190341_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2190341_5	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2190341_5	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-2190341_6	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-2190341_6	PHROG	phrog_5240	tail fiber protein	tail
UHGV-2190341_6	UniRef90	UniRef90_UPI00156E217C	Ig-like domain-containing protein	NA
UHGV-2190341_6	eggNOG-mapper	411471.SUBVAR_07280	Bacterial Ig-like domain 2	NA
UHGV-2190341_6	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2190341_6	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2190341_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2190341_7	PHROG	phrog_18444	NA	unknown function
UHGV-2190341_8	PHROG	phrog_6616	tail protein	tail
UHGV-2190341_8	UniRef90	UniRef90_UPI001D07A50C	collagen-like protein	NA
UHGV-2190341_8	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-2190341_8	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-2190341_9	PHROG	phrog_1194	NA	unknown function
UHGV-2190341_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2190341_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2190341_10	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-2190341_10	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-2190341_10	COG	COG1511	NA	NA
UHGV-2190341_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2190341_11	PHROG	phrog_706	NA	unknown function
UHGV-2190341_11	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-2190341_11	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2190341_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2190341_11	Structural annotation	PF06854	NA	NA
UHGV-2190341_12	PHROG	phrog_11299	NA	unknown function
UHGV-2190341_12	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2190341_12	Structural annotation	PF10666	NA	NA
UHGV-2190341_13	PHROG	phrog_3099	NA	unknown function
UHGV-2190341_13	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2190341_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2190341_14	PHROG	phrog_3266	tail completion	connector
UHGV-2190341_14	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2190341_14	Structural annotation	PF12691	NA	NA
UHGV-2190341_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2190341_15	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-2190341_15	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2190341_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2190341_15	Structural annotation	PF11114	NA	NA
UHGV-2190341_16	PHROG	phrog_3366	NA	unknown function
UHGV-2190341_16	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2190341_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2190341_17	PHROG	phrog_1129	holin	lysis
UHGV-2190341_17	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-2190341_17	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2190341_17	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2190341_17	Structural annotation	PF06946	NA	NA
UHGV-2190341_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2190341_19	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2190341_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-2190341_20	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-2190341_20	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2190341_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2190341_20	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2190341_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2190341_21	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-2190341_21	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2190341_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2190341_22	PHROG	phrog_28802	NA	unknown function
UHGV-2190341_22	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2190341_23	PHROG	phrog_20016	NA	unknown function
UHGV-2190341_23	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2190341_23	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2190341_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2190341_24	PHROG	phrog_16490	NA	unknown function
UHGV-2190341_24	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2190341_25	PHROG	phrog_22984	NA	unknown function
UHGV-2190341_26	PHROG	phrog_21718	NA	unknown function
UHGV-2190341_26	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-2190341_27	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-2190341_29	PHROG	phrog_25567	NA	unknown function
UHGV-2190341_29	UniRef90	UniRef90_A0A416SH94	Helix-turn-helix domain-containing protein	NA
UHGV-2190341_29	eggNOG-mapper	1321782.HMPREF1986_01432	Helix-turn-helix	NA
UHGV-2190341_29	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2190341_29	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-2190341_31	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-2190341_31	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-2190341_32	PHROG	phrog_3754	NA	unknown function
UHGV-2190341_32	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2190341_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2190341_33	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-2190341_33	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2190341_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2190341_33	COG	COG2369	NA	NA
UHGV-2190341_33	Structural annotation	PF06152	NA	NA
UHGV-2190341_35	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-2190341_35	UniRef90	UniRef90_A0A1H2TFD4	Protein tyrosine/serine phosphatase	NA
UHGV-2190341_35	eggNOG-mapper	794903.OPIT5_20595	protein tyrosine phosphatase activity	NA
UHGV-2190341_35	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-2190341_35	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-2190341_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-2190341_36	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-2190341_36	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2190341_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2190341_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2190341_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2190341_37	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-2190341_37	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2190341_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2190341_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2190341_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2190341_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-2190341_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2190341_38	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-2190341_38	AcrCatalog	cluster_11670	NA	NA
UHGV-2190341_40	PHROG	phrog_8684	NA	unknown function
UHGV-2190341_40	UniRef90	UniRef90_UPI000E48CB3D	YopX family protein	NA
UHGV-2190341_40	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-2190341_40	Pfam	PF09643	YopX protein	YopX
UHGV-2190341_40	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2190341_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2190341_41	PHROG	phrog_20593	NA	unknown function
UHGV-2190341_42	PHROG	phrog_419	NA	unknown function
UHGV-2190341_42	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-2190341_42	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-2190341_45	Structural annotation	NF041070	NA	NA
UHGV-2190341_46	PHROG	phrog_17690	NA	unknown function
UHGV-2190341_46	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-2190341_47	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-2190341_47	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2190341_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2190341_47	Structural annotation	PF01726, COG0640	NA	NA
UHGV-2190341_48	Structural annotation	NF010187	NA	NA
UHGV-2190341_49	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2190341_49	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-2190341_49	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-2190341_49	Pfam	PF06048	NA	DUF927
UHGV-2190341_49	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2190341_49	COG	COG5519	NA	NA
UHGV-2190341_49	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2190341_50	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2190341_50	PHROG	phrog_11992	NA	unknown function
UHGV-2190341_50	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-2190341_50	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-2190341_50	PADLOC	drt-UG29	DRT	DRT
UHGV-2190341_50	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2190341_50	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2190341_50	Structural annotation	PF01807, PF00401	NA	NA
UHGV-2190341_51	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2190341_51	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-2190341_51	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-2190341_51	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2190341_51	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2190341_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2190341_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2190341_52	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-2190341_52	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-2190341_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2190341_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2190341_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2190341_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2190341_52	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2190341_53	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2190341_53	UniRef90	UniRef90_A0A1V5UPJ3	ERF superfamily protein	NA
UHGV-2190341_53	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-2190341_53	Pfam	PF04404	ERF superfamily	ERF
UHGV-2190341_53	Structural annotation	PF04404, COG4712	NA	NA
UHGV-2190341_54	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-2190341_55	Structural annotation	NF011879	NA	NA
UHGV-2190341_60	PHROG	phrog_6058	NA	unknown function
UHGV-2190341_60	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-2190341_60	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-2190341_62	UniRef90	UniRef90_A0A395X814	XRE family transcriptional regulator	NA
UHGV-2190341_62	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-2190341_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2190341_62	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2190341_63	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2190341_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2190341_63	UniRef90	UniRef90_A0A395X7H2	XRE family transcriptional regulator	NA
UHGV-2190341_63	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-2190341_63	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2190341_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2190341_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA