UHGV-2191689

Genome information

vOTU vOTU-061907

Genome length 37,929 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-2191689
vOTU ID	vOTU-061907
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030381\|Ga0167499_1000013\|provirus_193865_231793
BioSample	SAMEA2737864
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.53
Jumbo phage	No

Genome content
Genome length	37,929 bps
GC content	27.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.22%
Average CDS length	484.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2191689_1	KOfam	K14059	int; integrase	NA
UHGV-2191689_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2191689_1	UniRef90	UniRef90_A0A1Q6L7V2	Tyr recombinase domain-containing protein	NA
UHGV-2191689_1	eggNOG-mapper	697329.Rumal_2496	Belongs to the 'phage' integrase family	NA
UHGV-2191689_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2191689_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2191689_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2191689_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2191689_2	UniRef90	UniRef90_A0A1Q6LE53	HTH cro/C1-type domain-containing protein	NA
UHGV-2191689_2	eggNOG-mapper	255470.cbdbB6	sequence-specific DNA binding	NA
UHGV-2191689_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2191689_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2191689_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2191689_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2191689_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2191689_3	UniRef90	UniRef90_A0A1Q6LE94	HTH cro/C1-type domain-containing protein	NA
UHGV-2191689_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2191689_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2191689_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2191689_4	PHROG	phrog_6058	NA	unknown function
UHGV-2191689_4	Structural annotation	PF12728, NF033787	NA	NA
UHGV-2191689_6	PHROG	phrog_14088	NA	unknown function
UHGV-2191689_6	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-2191689_6	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-2191689_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2191689_7	UniRef90	UniRef90_A0A7X2T575	NA	NA
UHGV-2191689_7	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-2191689_7	Pfam	PF13643	NA	DUF4145
UHGV-2191689_7	Structural annotation	PF13643	NA	NA
UHGV-2191689_10	PHROG	phrog_674	NA	unknown function
UHGV-2191689_10	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-2191689_10	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-2191689_10	Pfam	PF07083	NA	DUF1351
UHGV-2191689_10	Structural annotation	PF07083	NA	NA
UHGV-2191689_11	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2191689_11	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-2191689_11	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-2191689_11	Pfam	PF03837	RecT family	RecT
UHGV-2191689_11	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2191689_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2191689_11	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2191689_12	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2191689_12	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-2191689_12	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2191689_12	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2191689_12	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2191689_12	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2191689_13	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-2191689_13	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-2191689_14	PHROG	phrog_7566	NA	unknown function
UHGV-2191689_14	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-2191689_15	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2191689_15	UniRef90	UniRef90_A0A174X4J3	Phage replication initiation protein	NA
UHGV-2191689_15	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-2191689_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2191689_15	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2191689_16	Structural annotation	PF11417	NA	NA
UHGV-2191689_17	PHROG	phrog_4973	NA	unknown function
UHGV-2191689_17	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-2191689_17	eggNOG-mapper	640510.BC1001_5925	Helix-turn-helix domain	NA
UHGV-2191689_17	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2191689_17	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-2191689_18	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-2191689_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2191689_20	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2191689_20	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-2191689_20	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2191689_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2191689_20	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2191689_23	PHROG	phrog_23490	NA	unknown function
UHGV-2191689_39	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-2191689_40	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2191689_40	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2191689_40	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-2191689_40	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-2191689_40	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2191689_40	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2191689_40	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2191689_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2191689_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2191689_41	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-2191689_41	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-2191689_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2191689_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-2191689_41	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-2191689_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2191689_42	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2191689_42	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-2191689_42	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-2191689_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2191689_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-2191689_42	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2191689_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-2191689_43	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-2191689_43	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2191689_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2191689_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2191689_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-2191689_44	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2191689_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2191689_45	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-2191689_46	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2191689_46	UniRef90	UniRef90_R6VUX0	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-2191689_46	eggNOG-mapper	1151292.QEW_3259	Phage Mu protein F like protein	NA
UHGV-2191689_46	COG	COG2369	NA	NA
UHGV-2191689_49	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2191689_49	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-2191689_49	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2191689_49	Pfam	PF14359	NA	DUF4406
UHGV-2191689_49	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2191689_50	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2191689_50	UniRef90	UniRef90_R6HDW5	Phage scaffold protein	NA
UHGV-2191689_50	Pfam	PF14265	NA	DUF4355
UHGV-2191689_50	Structural annotation	PF14265	NA	NA
UHGV-2191689_51	PHROG	phrog_422	major head protein	head and packaging
UHGV-2191689_51	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-2191689_51	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2191689_52	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2191689_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2191689_54	eggNOG-mapper	665956.HMPREF1032_03623	NA	NA
UHGV-2191689_54	Structural annotation	TIGR01725	NA	NA
UHGV-2191689_55	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-2191689_55	Structural annotation	PF05657	NA	NA
UHGV-2191689_56	eggNOG-mapper	445972.ANACOL_01851	NA	NA
UHGV-2191689_56	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2191689_57	Structural annotation	PF12363	NA	NA
UHGV-2191689_59	PHROG	phrog_2700	NA	unknown function
UHGV-2191689_59	UniRef90	UniRef90_UPI00067E791F	SHOCT domain-containing protein	NA
UHGV-2191689_59	eggNOG-mapper	1227268.HMPREF1552_02052	Bacterial PH domain	NA
UHGV-2191689_59	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-2191689_59	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-2191689_59	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-2191689_61	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-2191689_62	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2191689_62	UniRef90	UniRef90_R6H5W8	Phage-related protein-like protein	NA
UHGV-2191689_62	eggNOG-mapper	1298920.KI911353_gene4841	SLT domain	NA
UHGV-2191689_62	COG	COG5412	Phage-related protein	NA
UHGV-2191689_62	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-2191689_63	PHROG	phrog_1194	NA	unknown function
UHGV-2191689_63	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2191689_64	PHROG	phrog_6616	tail protein	tail
UHGV-2191689_64	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-2191689_64	COG	COG4926	Phage-related protein	NA
UHGV-2191689_64	Structural annotation	PF01105, PF04862, NF033848, TIGR04362	NA	NA
UHGV-2191689_65	PHROG	phrog_372	tail protein	tail
UHGV-2191689_65	UniRef90	UniRef90_E9RT77	Fibronectin type-III domain-containing protein	NA
UHGV-2191689_65	eggNOG-mapper	657322.FPR_21920	NA	NA
UHGV-2191689_65	Pfam	PF05895	NA	DUF859
UHGV-2191689_65	COG	COG5563	NA	NA
UHGV-2191689_65	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-2191689_66	Structural annotation	PF07041	NA	NA
UHGV-2191689_68	Structural annotation	PF16938	NA	NA
UHGV-2191689_69	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2191689_69	PHROG	phrog_9611	endolysin	lysis
UHGV-2191689_69	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-2191689_69	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2191689_69	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2191689_69	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2191689_69	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-2191689_71	UniRef90	UniRef90_R6I264	HTH cro/C1-type domain-containing protein	NA
UHGV-2191689_71	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2191689_71	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2191689_71	Structural annotation	PF01381, NF010465, COG1476	NA	NA