UHGV-2191972

Genome information

Genome length 30,638 bps

CDS count 41

Completeness 78.48% (medium-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-2191972
vOTU ID	vOTU-042242
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030320\|Ga0244994_100122\|provirus_144118_179672
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.76
Jumbo phage	No

Genome content
Genome length	30,638 bps
GC content	42.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	95.29%
Average CDS length	716.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2191972_1	PHROG	phrog_26448	NA	unknown function
UHGV-2191972_1	eggNOG-mapper	1268240.ATFI01000007_gene394	NA	NA
UHGV-2191972_1	Pfam	PF20647	NA	DUF6808
UHGV-2191972_1	Structural annotation	PF20647	NA	NA
UHGV-2191972_2	PHROG	phrog_894	endolysin	lysis
UHGV-2191972_2	UniRef90	UniRef90_A0A173V631	Peptidase M15	NA
UHGV-2191972_2	eggNOG-mapper	1236514.BAKL01000034_gene2910	NA	NA
UHGV-2191972_2	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2191972_3	PHROG	phrog_20732	NA	unknown function
UHGV-2191972_3	UniRef90	UniRef90_B5D0A3	Toxin secretion/phage lysis holin	NA
UHGV-2191972_3	eggNOG-mapper	1236514.BAKL01000034_gene2911	Bacteriophage holin family	NA
UHGV-2191972_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2191972_4	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2191972_4	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2191972_4	UniRef90	UniRef90_A0A0P0GDN1	Putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2191972_4	eggNOG-mapper	1268240.ATFI01000007_gene397	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2191972_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2191972_4	NCBIFam	NF009949.0	master DNA invertase Mpi family serine-type recombinase	NA
UHGV-2191972_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2191972_4	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-2191972_7	eggNOG-mapper	1268240.ATFI01000007_gene405	NA	NA
UHGV-2191972_8	PHROG	phrog_3267	tail protein	tail
UHGV-2191972_8	eggNOG-mapper	1268240.ATFI01000007_gene406	NA	NA
UHGV-2191972_8	Structural annotation	PF16407, MF_04116, NF033597	NA	NA
UHGV-2191972_10	eggNOG-mapper	1268240.ATFI01000007_gene408	NA	NA
UHGV-2191972_10	Structural annotation	PF02010, MF_04116, NF041431, COG1361	NA	NA
UHGV-2191972_11	PHROG	phrog_26822	NA	unknown function
UHGV-2191972_11	eggNOG-mapper	1268240.ATFI01000007_gene409	Phage minor structural protein	NA
UHGV-2191972_11	COG	COG4926	Phage-related protein	NA
UHGV-2191972_11	Structural annotation	PF20942, PF18141, NF000799, COG1018	NA	NA
UHGV-2191972_12	PHROG	phrog_30639	NA	unknown function
UHGV-2191972_12	eggNOG-mapper	1268240.ATFI01000007_gene410	NA	NA
UHGV-2191972_12	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-2191972_13	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-2191972_13	UniRef90	UniRef90_UPI001D0764B6	tape measure protein	NA
UHGV-2191972_13	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-2191972_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2191972_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2191972_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2191972_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2191972_14	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-2191972_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2191972_15	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-2191972_15	UniRef90	UniRef90_UPI001009D571	antA/AntB antirepressor family protein	NA
UHGV-2191972_15	eggNOG-mapper	1230342.CTM_17202	Phage antirepressor protein KilAC domain	NA
UHGV-2191972_15	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2191972_15	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2191972_15	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2191972_15	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2191972_16	PHROG	phrog_1407	major tail protein	tail
UHGV-2191972_16	UniRef90	UniRef90_A0A0N7IEG0	Phage major tail protein 2	NA
UHGV-2191972_16	eggNOG-mapper	1268240.ATFI01000007_gene413	Phage tail tube protein	NA
UHGV-2191972_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2191972_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2191972_17	UniRef90	UniRef90_A0A412GGS1	NA	NA
UHGV-2191972_17	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-2191972_17	Structural annotation	PF11367, COG5003	NA	NA
UHGV-2191972_18	UniRef90	UniRef90_UPI0004685E7E	HK97 gp10 family phage protein	NA
UHGV-2191972_18	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-2191972_18	Structural annotation	TIGR01725	NA	NA
UHGV-2191972_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-2191972_19	UniRef90	UniRef90_A0A412RJC5	Head-tail adaptor protein	NA
UHGV-2191972_19	eggNOG-mapper	1124991.MU9_2660	head-tail adaptor	NA
UHGV-2191972_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2191972_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2191972_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2191972_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2191972_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2191972_20	UniRef90	UniRef90_A0A412RJB0	Phage gp6-like head-tail connector protein	NA
UHGV-2191972_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2191972_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2191972_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2191972_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2191972_21	UniRef90	UniRef90_A0A642PVH3	Phage major capsid protein	NA
UHGV-2191972_21	eggNOG-mapper	1236514.BAKL01000051_gene3695	Phage capsid family	NA
UHGV-2191972_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2191972_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2191972_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2191972_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2191972_22	KOfam	K06904	NA	NA
UHGV-2191972_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2191972_22	UniRef90	UniRef90_A0A642PU71	HK97 family phage prohead protease	NA
UHGV-2191972_22	eggNOG-mapper	1236514.BAKL01000051_gene3697	Caudovirus prohead serine protease	NA
UHGV-2191972_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2191972_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2191972_22	COG	COG3740	Phage head maturation protease	NA
UHGV-2191972_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2191972_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-2191972_23	UniRef90	UniRef90_A0A642PTT0	Phage portal protein	NA
UHGV-2191972_23	eggNOG-mapper	1236514.BAKL01000051_gene3699	Phage portal protein	NA
UHGV-2191972_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2191972_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2191972_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2191972_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2191972_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2191972_24	UniRef90	UniRef90_A0A412RJB6	Terminase large subunit	NA
UHGV-2191972_24	eggNOG-mapper	266762.HQ36_02085	Phage Terminase	NA
UHGV-2191972_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2191972_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2191972_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2191972_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2191972_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2191972_26	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2191972_26	UniRef90	UniRef90_A0A412RJL1	HNH endonuclease	NA
UHGV-2191972_26	eggNOG-mapper	266762.HQ36_02070	HNH endonuclease	NA
UHGV-2191972_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2191972_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2191972_27	eggNOG-mapper	411476.BACOVA_04649	NA	NA
UHGV-2191972_28	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-2191972_29	PHROG	phrog_874	NA	unknown function
UHGV-2191972_29	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2191972_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2191972_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2191972_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2191972_30	UniRef90	UniRef90_I9TD60	PAPS_reduct domain-containing protein	NA
UHGV-2191972_30	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2191972_30	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2191972_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2191972_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2191972_30	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-2191972_32	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2191972_32	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2191972_32	UniRef90	UniRef90_U2CMA3	Resolvase protein	NA
UHGV-2191972_32	eggNOG-mapper	1235813.JCM10003_629	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2191972_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2191972_32	NCBIFam	NF009949.0	master DNA invertase Mpi family serine-type recombinase	NA
UHGV-2191972_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2191972_32	Structural annotation	PF00239, MF_00489, NF009949, COG1961	NA	NA
UHGV-2191972_34	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-2191972_34	Structural annotation	TIGR01453	NA	NA
UHGV-2191972_35	UniRef90	UniRef90_UPI001D0934FC	NA	NA
UHGV-2191972_35	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-2191972_35	Pfam	PF04448	NA	DUF551
UHGV-2191972_35	Structural annotation	PF04448	NA	NA
UHGV-2191972_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2191972_36	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2191972_36	UniRef90	UniRef90_I9PVD0	Methyltransferase	NA
UHGV-2191972_36	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2191972_36	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2191972_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2191972_36	COG	COG0863	DNA modification methylase	NA
UHGV-2191972_36	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2191972_37	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2191972_37	UniRef90	UniRef90_A0A412RJC8	DNA_pol3_beta_3 domain-containing protein	NA
UHGV-2191972_37	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-2191972_37	Structural annotation	PF02767, TIGR00663, COG0592	NA	NA
UHGV-2191972_38	UniRef90	UniRef90_F3PKH6	Conserved domain protein	NA
UHGV-2191972_38	eggNOG-mapper	1268240.ATFI01000007_gene438	NA	NA
UHGV-2191972_38	Structural annotation	PF00679, MF_00707, NF010078, COG4492	NA	NA
UHGV-2191972_39	UniRef90	UniRef90_A0A412RJF5	NA	NA
UHGV-2191972_39	eggNOG-mapper	1236517.BAKO01000014_gene1761	COG NOG19098 non supervised orthologous group	NA
UHGV-2191972_39	Pfam	PF11325	NA	DUF3127
UHGV-2191972_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2191972_39	Structural annotation	PF11325, MF_00720, NF004476, COG2965	NA	NA
UHGV-2191972_40	eggNOG-mapper	1268240.ATFI01000007_gene440	NA	NA
UHGV-2191972_40	Structural annotation	PF05144, MF_00408, TIGR01629, COG2946	NA	NA
UHGV-2191972_41	UniRef90	UniRef90_A0A7X8WCY8	NA	NA
UHGV-2191972_41	eggNOG-mapper	1268240.ATFI01000007_gene441	COG NOG14445 non supervised orthologous group	NA
UHGV-2191972_41	Pfam	PF14902	NA	DUF4494