UHGV-2198804

Genome information

Genome length 35,650 bps

CDS count 51

Completeness 94.83% (high-quality)

geNomad score 0.9664

Prediction confidence Confident

Genome information
Genome ID	UHGV-2198804
vOTU ID	vOTU-068932
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300035652\|Ga0134453_00062\|provirus_3_35652
BioSample	SAMN03922534
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9664
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.52
Jumbo phage	No

Genome content
Genome length	35,650 bps
GC content	42.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.32%
Average CDS length	641.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2198804_1	eggNOG-mapper	1160721.RBI_I01411	NA	NA
UHGV-2198804_2	eggNOG-mapper	877411.JMMA01000002_gene21	NA	NA
UHGV-2198804_4	UniRef90	UniRef90_E9SCN4	Conserved domain protein	NA
UHGV-2198804_6	UniRef90	UniRef90_A0A374HJU7	NA	NA
UHGV-2198804_6	eggNOG-mapper	1160721.RBI_I00343	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)	NA
UHGV-2198804_6	Pfam	PF14285	NA	DUF4367
UHGV-2198804_6	COG	COG2834	Outer membrane lipoprotein-sorting protein	NA
UHGV-2198804_7	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-2198804_7	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-2198804_7	UniRef90	UniRef90_A0A373SBH0	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2198804_7	eggNOG-mapper	1160721.RBI_I00327	DNA-templated transcription, initiation	NA
UHGV-2198804_7	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2198804_7	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2198804_7	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2198804_7	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2198804_7	Structural annotation	PF08281, PF04542, MF_00962, TIGR02985, COG1595	NA	NA
UHGV-2198804_8	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2198804_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2198804_8	UniRef90	UniRef90_W0U882	HTH cro/C1-type domain-containing protein	NA
UHGV-2198804_8	eggNOG-mapper	1160721.RBI_II00518	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2198804_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2198804_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2198804_8	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2198804_9	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2198804_9	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2198804_9	UniRef90	UniRef90_W0U9G5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2198804_9	eggNOG-mapper	1160721.RBI_II00519	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2198804_9	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-2198804_9	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2198804_9	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-2198804_9	COG	COG0338	DNA-adenine methylase	NA
UHGV-2198804_9	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-2198804_11	KOfam	K07273	acm; lysozyme	NA
UHGV-2198804_11	PHROG	phrog_291	endolysin	lysis
UHGV-2198804_11	UniRef90	UniRef90_W0U9I6	Endolysin (Glycoside Hydrolase Family 25 protein )	NA
UHGV-2198804_11	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-2198804_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2198804_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2198804_11	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-2198804_12	PHROG	phrog_13256	NA	unknown function
UHGV-2198804_12	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-2198804_16	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2198804_16	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2198804_16	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2198804_17	PHROG	phrog_1194	NA	unknown function
UHGV-2198804_17	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-2198804_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2198804_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2198804_18	UniRef90	UniRef90_W0U887	Putative minor tail protein	NA
UHGV-2198804_18	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-2198804_18	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-2198804_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2198804_19	PHROG	phrog_2546	NA	unknown function
UHGV-2198804_19	UniRef90	UniRef90_A0A356CXM2	zinc_ribbon_2 domain-containing protein	NA
UHGV-2198804_19	eggNOG-mapper	1160721.RBI_II00529	PFAM Tellurite resistance protein TerB	NA
UHGV-2198804_19	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2198804_19	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-2198804_19	Structural annotation	PF13240	NA	NA
UHGV-2198804_20	PHROG	phrog_706	NA	unknown function
UHGV-2198804_20	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-2198804_20	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2198804_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2198804_20	Structural annotation	PF06854	NA	NA
UHGV-2198804_21	PHROG	phrog_11299	NA	unknown function
UHGV-2198804_21	eggNOG-mapper	1160721.RBI_II00531	NA	NA
UHGV-2198804_21	Structural annotation	PF20378	NA	NA
UHGV-2198804_22	PHROG	phrog_3099	NA	unknown function
UHGV-2198804_22	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2198804_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2198804_23	PHROG	phrog_3266	tail completion	connector
UHGV-2198804_23	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-2198804_23	Structural annotation	PF20765	NA	NA
UHGV-2198804_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2198804_24	UniRef90	UniRef90_UPI000F52DD2A	minor capsid protein	NA
UHGV-2198804_24	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-2198804_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2198804_24	Structural annotation	PF11114	NA	NA
UHGV-2198804_25	Pfam	PF20536	NA	DUF6751
UHGV-2198804_25	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2198804_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2198804_26	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2198804_27	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-2198804_27	UniRef90	UniRef90_W0U8Z9	Rho_N domain-containing protein	NA
UHGV-2198804_27	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2198804_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-2198804_28	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2198804_28	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-2198804_28	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2198804_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2198804_29	UniRef90	UniRef90_W0U9H1	Phage minor structural protein	NA
UHGV-2198804_29	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-2198804_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2198804_29	Structural annotation	PF06810	NA	NA
UHGV-2198804_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2198804_32	UniRef90	UniRef90_W0U9J3	Phage minor capsid protein (Glycoside Hydrolase Family 25 protein )	NA
UHGV-2198804_32	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-2198804_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2198804_32	COG	COG2369	NA	NA
UHGV-2198804_32	Structural annotation	PF06152, PF12636	NA	NA
UHGV-2198804_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-2198804_33	UniRef90	UniRef90_W0U901	Phage portal protein	NA
UHGV-2198804_33	eggNOG-mapper	1160721.RBI_II00542	NA	NA
UHGV-2198804_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2198804_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2198804_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2198804_34	UniRef90	UniRef90_W0U8A2	Phage terminase, large subunit	NA
UHGV-2198804_34	eggNOG-mapper	1160721.RBI_II00543	Phage terminase, large subunit, PBSX family	NA
UHGV-2198804_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2198804_34	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2198804_35	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2198804_35	UniRef90	UniRef90_W0U9H3	Phage terminase, small subunit	NA
UHGV-2198804_35	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-2198804_35	Structural annotation	PF07141	NA	NA
UHGV-2198804_36	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2198804_36	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2198804_36	UniRef90	UniRef90_A0A374HXW9	NGN domain-containing protein	NA
UHGV-2198804_36	eggNOG-mapper	1160721.RBI_II00545	Transcription termination factor nusG	NA
UHGV-2198804_36	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2198804_36	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2198804_36	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2198804_37	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2198804_37	UniRef90	UniRef90_UPI000F520548	NA	NA
UHGV-2198804_37	eggNOG-mapper	1160721.RBI_II00546	NA	NA
UHGV-2198804_37	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2198804_37	Structural annotation	PF11985	NA	NA
UHGV-2198804_38	PHROG	phrog_25462	NA	unknown function
UHGV-2198804_38	UniRef90	UniRef90_UPI000F547D8B	type VI secretion protein	NA
UHGV-2198804_38	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-2198804_38	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2198804_39	PHROG	phrog_462	lipoprotein	other
UHGV-2198804_39	eggNOG-mapper	1160721.RBI_II00548	NA	NA
UHGV-2198804_40	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-2198804_40	UniRef90	UniRef90_W0U9H5	Possible positive regulator of late transcription	NA
UHGV-2198804_40	eggNOG-mapper	1160721.RBI_II00549	Mor transcription activator	NA
UHGV-2198804_40	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2198804_40	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2198804_40	Structural annotation	PF08765, COG5566	NA	NA
UHGV-2198804_41	PHROG	phrog_286	NA	unknown function
UHGV-2198804_41	UniRef90	UniRef90_A0A356CXE0	Regulatory protein GemA	NA
UHGV-2198804_41	eggNOG-mapper	1160721.RBI_II00550	NA	NA
UHGV-2198804_41	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2198804_41	Structural annotation	PF06252	NA	NA
UHGV-2198804_42	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-2198804_42	AcrCatalog	cluster_71843	NA	NA
UHGV-2198804_43	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2198804_43	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2198804_43	UniRef90	UniRef90_W0U909	SpoVT-AbrB domain-containing protein	NA
UHGV-2198804_43	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-2198804_43	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2198804_43	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2198804_44	PHROG	phrog_4292	NA	unknown function
UHGV-2198804_44	eggNOG-mapper	1160721.RBI_II00553	NA	NA
UHGV-2198804_45	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2198804_45	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2198804_45	UniRef90	UniRef90_W0U9H6	DNA transposition protein	NA
UHGV-2198804_45	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-2198804_45	Pfam	PF13401	AAA domain	AAA_22
UHGV-2198804_45	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2198804_45	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-2198804_46	PHROG	phrog_310	transposase	integration and excision
UHGV-2198804_46	UniRef90	UniRef90_W0U922	MU-like transposase	NA
UHGV-2198804_46	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-2198804_46	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2198804_46	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-2198804_46	Pfam	PF00665	Integrase core domain	rve
UHGV-2198804_46	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2198804_46	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2198804_46	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2198804_47	AcrCatalog	cluster_158759	NA	NA
UHGV-2198804_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2198804_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2198804_49	UniRef90	UniRef90_UPI000368B8B2	helix-turn-helix domain-containing protein	NA
UHGV-2198804_49	eggNOG-mapper	1121468.AUBR01000008_gene2070	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2198804_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2198804_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2198804_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2198804_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA