UHGV-2198907

Genome information

Genome length 18,387 bps

CDS count 23

Completeness 51.63% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-2198907
vOTU ID	vOTU-039764
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300039367\|Ga0169600_00453
BioSample	SAMEA2580019
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.85
Jumbo phage	No

Genome content
Genome length	18,387 bps
GC content	48.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	97.43%
Average CDS length	780.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2198907_1	eggNOG-mapper	1094508.Tsac_2409	NA	NA
UHGV-2198907_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2198907_3	PHROG	phrog_291	endolysin	lysis
UHGV-2198907_3	UniRef90	UniRef90_A0A3D0PUA7	Glycosyl hydrolase family 25	NA
UHGV-2198907_3	eggNOG-mapper	1105031.HMPREF1141_1412	family 25	NA
UHGV-2198907_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2198907_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2198907_4	eggNOG-mapper	632245.CLP_1663	nuclear chromosome segregation	NA
UHGV-2198907_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2198907_5	PHROG	phrog_7389	tail fiber protein	tail
UHGV-2198907_5	eggNOG-mapper	742738.HMPREF9460_03963	tail collar domain protein	NA
UHGV-2198907_5	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-2198907_5	COG	COG4675	Phage tail collar domain	NA
UHGV-2198907_6	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-2198907_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2198907_7	UniRef90	UniRef90_UPI00073EA371	phage tail protein	NA
UHGV-2198907_7	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2198907_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2198907_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2198907_7	COG	COG4926	Phage-related protein	NA
UHGV-2198907_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2198907_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2198907_8	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-2198907_8	eggNOG-mapper	1443125.Z962_p0065	phage tail	NA
UHGV-2198907_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-2198907_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2198907_9	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2198907_9	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-2198907_9	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-2198907_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2198907_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2198907_9	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2198907_9	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-2198907_10	PHROG	phrog_3033	NA	unknown function
UHGV-2198907_10	eggNOG-mapper	483218.BACPEC_01316	NA	NA
UHGV-2198907_11	PHROG	phrog_709	NA	unknown function
UHGV-2198907_11	eggNOG-mapper	742741.HMPREF9475_02368	NA	NA
UHGV-2198907_11	Structural annotation	PF11836	NA	NA
UHGV-2198907_12	PHROG	phrog_88	major tail protein	tail
UHGV-2198907_12	UniRef90	UniRef90_U2R3I9	Phage major tail protein, phi13 family	NA
UHGV-2198907_12	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-2198907_12	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2198907_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2198907_12	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-2198907_13	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-2198907_13	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-2198907_13	Structural annotation	PF20765	NA	NA
UHGV-2198907_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2198907_14	UniRef90	UniRef90_UPI001E359353	HK97 gp10 family phage protein	NA
UHGV-2198907_14	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-2198907_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2198907_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2198907_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2198907_15	UniRef90	UniRef90_A0A7X9GK78	Phage head closure protein	NA
UHGV-2198907_15	eggNOG-mapper	887929.HMP0721_1263	NA	NA
UHGV-2198907_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2198907_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2198907_16	PHROG	phrog_5223	neck protein	connector
UHGV-2198907_16	UniRef90	UniRef90_A0A3B8U278	DNA-packaging protein	NA
UHGV-2198907_16	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-2198907_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2198907_17	PHROG	phrog_28766	tail fiber protein	tail
UHGV-2198907_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-2198907_18	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-2198907_18	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-2198907_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2198907_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2198907_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2198907_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2198907_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2198907_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2198907_19	UniRef90	UniRef90_U4R420	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2198907_19	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-2198907_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2198907_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2198907_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2198907_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-2198907_20	UniRef90	UniRef90_A0A3B8U1I5	Phage portal protein	NA
UHGV-2198907_20	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-2198907_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2198907_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2198907_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2198907_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2198907_21	UniRef90	UniRef90_C4GAS7	Putative phage terminase, large subunit	NA
UHGV-2198907_21	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-2198907_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2198907_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2198907_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2198907_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2198907_22	PHROG	phrog_1066	NA	unknown function
UHGV-2198907_22	eggNOG-mapper	1123263.AUKY01000046_gene465	NA	NA
UHGV-2198907_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2198907_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2198907_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2198907_23	UniRef90	UniRef90_D9SQ19	Prophage LambdaBa04, GP54	NA
UHGV-2198907_23	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-2198907_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA