UHGV-2200125

Genome information

Genome length 38,757 bps

CDS count 50

Completeness 77.26% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-2200125
vOTU ID	vOTU-018664
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300035647\|Ga0134431_00585
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.56
Jumbo phage	No

Genome content
Genome length	38,757 bps
GC content	43.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	85.28%
Average CDS length	662.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2200125_1	PHROG	phrog_64	portal protein	head and packaging
UHGV-2200125_1	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-2200125_1	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2200125_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2200125_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2200125_2	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2200125_2	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-2200125_2	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-2200125_2	eggNOG-mapper	706434.HMPREF9429_00533	Type I restriction-modification system, M subunit	NA
UHGV-2200125_2	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-2200125_2	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2200125_2	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2200125_2	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-2200125_3	PHROG	phrog_2668	NA	unknown function
UHGV-2200125_3	UniRef90	UniRef90_UPI0005CCA1A4	restriction endonuclease subunit S	NA
UHGV-2200125_3	eggNOG-mapper	706434.HMPREF9429_00532	NA	NA
UHGV-2200125_3	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2200125_3	Structural annotation	PF01420, COG0732	NA	NA
UHGV-2200125_4	PHROG	phrog_1129	holin	lysis
UHGV-2200125_4	UniRef90	UniRef90_UPI00156E9657	phage holin family protein	NA
UHGV-2200125_4	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2200125_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2200125_4	Structural annotation	PF16079	NA	NA
UHGV-2200125_5	PHROG	phrog_4105	NA	unknown function
UHGV-2200125_5	eggNOG-mapper	97139.C824_05951	NA	NA
UHGV-2200125_9	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2200125_10	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-2200125_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2200125_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2200125_11	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-2200125_11	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-2200125_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2200125_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2200125_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2200125_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-2200125_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2200125_12	PHROG	phrog_2412	NA	unknown function
UHGV-2200125_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2200125_19	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2200125_19	UniRef90	UniRef90_UPI00156EBD00	phage/plasmid primase, P4 family	NA
UHGV-2200125_19	eggNOG-mapper	903814.ELI_2915	DNA primase	NA
UHGV-2200125_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2200125_19	Pfam	PF19263	NA	DUF5906
UHGV-2200125_19	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2200125_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2200125_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2200125_19	Structural annotation	PF05272, PF03288, PF08706, TIGR01613, COG3378	NA	NA
UHGV-2200125_20	UniRef90	UniRef90_A0A1E3U7J6	HTH cro/C1-type domain-containing protein	NA
UHGV-2200125_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2200125_20	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-2200125_21	UniRef90	UniRef90_A0A1E3U7J6	HTH cro/C1-type domain-containing protein	NA
UHGV-2200125_21	eggNOG-mapper	1121289.JHVL01000006_gene2897	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2200125_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2200125_21	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-2200125_22	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-2200125_22	PHROG	phrog_20388	endolysin	lysis
UHGV-2200125_22	UniRef90	UniRef90_UPI001898BCA2	glucosaminidase domain-containing protein	NA
UHGV-2200125_22	eggNOG-mapper	658655.HMPREF0988_00104	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2200125_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2200125_22	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2200125_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2200125_22	Structural annotation	PF01832, NF038016, COG1705, COG5632, COG4991	NA	NA
UHGV-2200125_23	Structural annotation	PF15188	NA	NA
UHGV-2200125_25	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-2200125_25	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2200125_25	UniRef90	UniRef90_A8V536	DNA polymerase III alpha subunit (Fragment)	NA
UHGV-2200125_25	eggNOG-mapper	1401067.HMPREF0872_07245	DNA-directed DNA polymerase activity	NA
UHGV-2200125_25	Pfam	PF02811	PHP domain	PHP
UHGV-2200125_25	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-2200125_26	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-2200125_27	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-2200125_28	PHROG	phrog_16490	NA	unknown function
UHGV-2200125_28	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-2200125_28	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-2200125_30	PHROG	phrog_21718	NA	unknown function
UHGV-2200125_31	KOfam	K07496	K07496; putative transposase	NA
UHGV-2200125_31	PHROG	phrog_506	transposase	integration and excision
UHGV-2200125_31	UniRef90	UniRef90_W0FK38	Putative transposase	NA
UHGV-2200125_31	eggNOG-mapper	1408323.JQKK01000037_gene3044	Probable transposase	NA
UHGV-2200125_31	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-2200125_31	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-2200125_31	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-2200125_31	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-2200125_31	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-2200125_31	COG	COG0675	Transposase	NA
UHGV-2200125_31	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-2200125_34	PHROG	phrog_538	minor tail protein	tail
UHGV-2200125_34	UniRef90	UniRef90_UPI001C0F168D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2200125_34	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-2200125_34	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2200125_35	PHROG	phrog_36410	NA	unknown function
UHGV-2200125_35	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-2200125_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-2200125_35	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2200125_36	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2200125_36	UniRef90	UniRef90_A0A1H7PKD3	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2200125_36	eggNOG-mapper	665956.HMPREF1032_02256	Phage tail tape measure protein, TP901 family	NA
UHGV-2200125_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2200125_36	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2200125_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2200125_36	COG	COG5283	Phage-related tail protein	NA
UHGV-2200125_36	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2200125_37	PHROG	phrog_6541	NA	unknown function
UHGV-2200125_37	eggNOG-mapper	1196322.A370_04057	NA	NA
UHGV-2200125_38	PHROG	phrog_6280	NA	unknown function
UHGV-2200125_38	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-2200125_38	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-2200125_39	PHROG	phrog_6686	tail tube protein	tail
UHGV-2200125_39	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-2200125_39	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-2200125_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2200125_40	PHROG	phrog_7585	NA	unknown function
UHGV-2200125_40	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-2200125_40	Structural annotation	PF05657, COG5003	NA	NA
UHGV-2200125_41	eggNOG-mapper	1304880.JAGB01000002_gene2213	NA	NA
UHGV-2200125_41	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2200125_42	PHROG	phrog_8435	NA	unknown function
UHGV-2200125_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2200125_43	PHROG	phrog_4020	NA	unknown function
UHGV-2200125_43	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-2200125_45	PHROG	phrog_29	major head protein	head and packaging
UHGV-2200125_45	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-2200125_45	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-2200125_45	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2200125_45	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-2200125_46	PHROG	phrog_909	major head protein	head and packaging
UHGV-2200125_46	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-2200125_46	Structural annotation	PF02924	NA	NA
UHGV-2200125_47	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2200125_48	PHROG	phrog_1315	NA	unknown function
UHGV-2200125_50	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-2200125_50	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-2200125_50	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-2200125_50	COG	COG4695	Phage portal protein BeeE	NA