UHGV-2203186

Genome information

Genome length 37,075 bps

CDS count 52

Completeness 79.89% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-2203186
vOTU ID	vOTU-041378
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300039368\|Ga0169262_00002\|provirus_298_37372
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.07
Jumbo phage	No

Genome content
Genome length	37,075 bps
GC content	41.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.42%
Average CDS length	668.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2203186_1	KOfam	K14059	int; integrase	NA
UHGV-2203186_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2203186_1	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-2203186_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-2203186_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2203186_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2203186_2	KOfam	K14059	int; integrase	NA
UHGV-2203186_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2203186_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-2203186_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2203186_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-2203186_4	PHROG	phrog_1914	NA	unknown function
UHGV-2203186_4	UniRef90	UniRef90_A0A2N0ULV1	Peptidase_M78 domain-containing protein	NA
UHGV-2203186_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2203186_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2203186_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2203186_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2203186_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2203186_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2203186_5	UniRef90	UniRef90_A0A2N0ULR3	HTH-type transcriptional regulator ImmR	NA
UHGV-2203186_5	eggNOG-mapper	649747.HMPREF0083_01078	Transcriptional regulator	NA
UHGV-2203186_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2203186_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2203186_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2203186_6	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-2203186_6	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-2203186_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2203186_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2203186_8	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-2203186_8	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-2203186_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2203186_8	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2203186_8	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2203186_8	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-2203186_10	eggNOG-mapper	1235793.C809_00533	NA	NA
UHGV-2203186_11	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2203186_11	PHROG	phrog_1499	NA	unknown function
UHGV-2203186_11	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-2203186_11	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-2203186_11	Pfam	PF02463	RecF/RecN/SMC N terminal domain	SMC_N
UHGV-2203186_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2203186_11	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-2203186_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2203186_13	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-2203186_13	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-2203186_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-2203186_13	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2203186_14	PHROG	phrog_2698	NA	unknown function
UHGV-2203186_14	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-2203186_14	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-2203186_14	Structural annotation	PF17426, NF005674	NA	NA
UHGV-2203186_15	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2203186_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2203186_15	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-2203186_15	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-2203186_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2203186_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2203186_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2203186_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2203186_15	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2203186_16	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2203186_16	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2203186_16	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-2203186_16	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2203186_16	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2203186_16	Pfam	PF13481	AAA domain	AAA_25
UHGV-2203186_16	COG	COG3598	RecA-family ATPase	NA
UHGV-2203186_16	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2203186_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2203186_17	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-2203186_17	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2203186_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2203186_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2203186_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2203186_18	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-2203186_21	PHROG	phrog_10714	NA	unknown function
UHGV-2203186_21	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-2203186_22	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2203186_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2203186_22	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-2203186_22	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2203186_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2203186_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2203186_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2203186_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2203186_25	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-2203186_25	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-2203186_25	Pfam	PF07374	NA	DUF1492
UHGV-2203186_25	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2203186_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2203186_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2203186_26	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-2203186_26	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2203186_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2203186_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2203186_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2203186_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2203186_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2203186_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2203186_27	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-2203186_27	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2203186_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2203186_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2203186_28	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-2203186_28	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-2203186_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2203186_28	COG	COG2369	NA	NA
UHGV-2203186_28	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2203186_29	PHROG	phrog_20195	NA	unknown function
UHGV-2203186_30	PHROG	phrog_2616	NA	unknown function
UHGV-2203186_30	Structural annotation	PF01281	NA	NA
UHGV-2203186_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2203186_31	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-2203186_31	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2203186_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2203186_31	Structural annotation	PF06810	NA	NA
UHGV-2203186_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-2203186_32	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2203186_32	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2203186_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2203186_33	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2203186_33	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2203186_34	PHROG	phrog_3366	NA	unknown function
UHGV-2203186_34	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2203186_34	Pfam	PF20536	NA	DUF6751
UHGV-2203186_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2203186_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2203186_35	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-2203186_35	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2203186_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2203186_35	Structural annotation	PF11114	NA	NA
UHGV-2203186_36	PHROG	phrog_3266	tail completion	connector
UHGV-2203186_36	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2203186_36	Structural annotation	PF20765	NA	NA
UHGV-2203186_37	PHROG	phrog_3099	NA	unknown function
UHGV-2203186_37	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2203186_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2203186_38	PHROG	phrog_11299	NA	unknown function
UHGV-2203186_38	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2203186_38	Structural annotation	PF10666	NA	NA
UHGV-2203186_39	PHROG	phrog_706	NA	unknown function
UHGV-2203186_39	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-2203186_39	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2203186_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2203186_39	Structural annotation	PF06854	NA	NA
UHGV-2203186_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2203186_41	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-2203186_41	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2203186_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2203186_41	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2203186_42	PHROG	phrog_1194	NA	unknown function
UHGV-2203186_42	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-2203186_42	Pfam	PF20458	NA	DUF6711
UHGV-2203186_42	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2203186_43	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2203186_44	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-2203186_44	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-2203186_46	PHROG	phrog_1863	NA	unknown function
UHGV-2203186_46	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2203186_46	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-2203186_47	PHROG	phrog_443	holin	lysis
UHGV-2203186_47	UniRef90	UniRef90_R6MWB0	Conserved domain protein	NA
UHGV-2203186_47	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-2203186_47	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2203186_47	Structural annotation	PF16945	NA	NA
UHGV-2203186_48	PHROG	phrog_18591	NA	unknown function
UHGV-2203186_48	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-2203186_49	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2203186_49	PHROG	phrog_1794	amidase	lysis
UHGV-2203186_49	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-2203186_49	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2203186_49	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2203186_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2203186_49	Structural annotation	PF01520, PF18342, NF038140, COG0860, COG4991	NA	NA
UHGV-2203186_50	eggNOG-mapper	500633.CLOHIR_00330	NA	NA
UHGV-2203186_50	Structural annotation	PF04381, MF_00194, NF001461, COG2974	NA	NA
UHGV-2203186_52	eggNOG-mapper	500633.CLOHIR_00328	NA	NA