UHGV-2204148

Genome information

Genome length 28,782 bps

CDS count 41

Completeness 59.24% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-2204148
vOTU ID	vOTU-012247
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	7000000040\|SRS043411_WUGC_scaffold_27361
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.42
Jumbo phage	No

Genome content
Genome length	28,782 bps
GC content	48.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	86.62%
Average CDS length	610.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2204148_2	Structural annotation	COG4416	NA	NA
UHGV-2204148_3	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2204148_3	UniRef90	UniRef90_A0A845RCL8	Helix-turn-helix domain-containing protein	NA
UHGV-2204148_3	eggNOG-mapper	1007096.BAGW01000022_gene2658	transposase activity	NA
UHGV-2204148_3	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2204148_3	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2204148_3	Structural annotation	PF07141	NA	NA
UHGV-2204148_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2204148_4	UniRef90	UniRef90_A0A349PW62	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-2204148_4	eggNOG-mapper	742738.HMPREF9460_02505	Terminase-like family	NA
UHGV-2204148_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-2204148_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-2204148_5	UniRef90	UniRef90_UPI00189F3DE6	phage portal protein	NA
UHGV-2204148_5	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2204148_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2204148_6	KOfam	K14059	int; integrase	NA
UHGV-2204148_6	PHROG	phrog_1	integrase	integration and excision
UHGV-2204148_6	UniRef90	UniRef90_UPI001898152E	site-specific integrase	NA
UHGV-2204148_6	eggNOG-mapper	1291050.JAGE01000002_gene3375	Belongs to the 'phage' integrase family	NA
UHGV-2204148_6	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2204148_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2204148_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2204148_6	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2204148_7	UniRef90	UniRef90_A0A3D1LDL3	DNA-binding protein	NA
UHGV-2204148_8	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2204148_8	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2204148_8	UniRef90	UniRef90_A0A6N2UJW2	Virulence-associated protein E	NA
UHGV-2204148_8	eggNOG-mapper	693746.OBV_01820	Virulence-associated protein E	NA
UHGV-2204148_8	PADLOC	drt-cluster192	DRT	DRT
UHGV-2204148_8	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2204148_8	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2204148_8	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2204148_8	Structural annotation	PF08706, PF05272, PF19898, MF_00974, MF_00016, NF005477, COG3378	NA	NA
UHGV-2204148_14	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-2204148_16	PHROG	phrog_806	NA	unknown function
UHGV-2204148_16	Pfam	PF11611	NA	DUF4352
UHGV-2204148_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2204148_17	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-2204148_17	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2204148_18	UniRef90	UniRef90_A0A3A8VXT5	XRE family transcriptional regulator	NA
UHGV-2204148_18	eggNOG-mapper	1145276.T479_12115	Helix-turn-helix domain	NA
UHGV-2204148_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2204148_18	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2204148_19	PHROG	phrog_15863	NA	unknown function
UHGV-2204148_19	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-2204148_19	eggNOG-mapper	471855.Shel_20200	Heat shock protein DnaJ domain protein	NA
UHGV-2204148_19	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-2204148_19	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-2204148_20	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2204148_20	eggNOG-mapper	1519439.JPJG01000054_gene2128	NA	NA
UHGV-2204148_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-2204148_26	UniRef90	UniRef90_UPI0011C9B1C6	phage portal protein	NA
UHGV-2204148_26	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2204148_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2204148_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2204148_27	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2204148_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2204148_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-2204148_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-2204148_30	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-2204148_30	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-2204148_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2204148_30	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-2204148_31	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-2204148_33	UniRef90	UniRef90_A0A845R6M6	DNA-packaging protein	NA
UHGV-2204148_33	Structural annotation	TIGR01560	NA	NA
UHGV-2204148_34	PHROG	phrog_1233	NA	unknown function
UHGV-2204148_34	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-2204148_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2204148_35	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-2204148_35	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-2204148_35	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2204148_36	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2204148_37	PHROG	phrog_158	major tail protein	tail
UHGV-2204148_37	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-2204148_37	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2204148_38	UniRef90	UniRef90_A0A845R9E6	NA	NA
UHGV-2204148_38	Pfam	PF16478	NA	DUF5055
UHGV-2204148_38	Structural annotation	PF16478	NA	NA
UHGV-2204148_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2204148_41	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-2204148_41	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-2204148_41	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA