UHGV-2205185

Genome information

Genome length 22,783 bps

CDS count 37

Completeness 64.55% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-2205185
vOTU ID	vOTU-042277
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030035\|Ga0245021_101409
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.94
Jumbo phage	No

Genome content
Genome length	22,783 bps
GC content	40.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	94.11%
Average CDS length	584.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2205185_2	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2205185_2	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2205185_5	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2205185_5	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2205185_5	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2205185_5	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2205185_5	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2205185_5	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2205185_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2205185_5	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2205185_6	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-2205185_6	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-2205185_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2205185_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2205185_8	UniRef90	UniRef90_B7AR52	HTH cro/C1-type domain-containing protein	NA
UHGV-2205185_8	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-2205185_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2205185_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2205185_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2205185_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2205185_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2205185_12	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2205185_12	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-2205185_12	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-2205185_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2205185_13	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2205185_13	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-2205185_13	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-2205185_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2205185_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2205185_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2205185_15	UniRef90	UniRef90_A0A7X5E0D0	RNA polymerase subunit sigma-70	NA
UHGV-2205185_15	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-2205185_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2205185_16	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-2205185_16	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-2205185_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2205185_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2205185_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2205185_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2205185_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-2205185_17	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-2205185_17	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-2205185_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2205185_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2205185_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2205185_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2205185_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2205185_18	UniRef90	UniRef90_A0A350VIU3	ATP-dependent Clp protease proteolytic subunit (Fragment)	NA
UHGV-2205185_18	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-2205185_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2205185_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2205185_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2205185_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-2205185_19	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-2205185_19	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-2205185_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2205185_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2205185_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2205185_19	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-2205185_21	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-2205185_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2205185_22	Structural annotation	PF05657	NA	NA
UHGV-2205185_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2205185_23	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-2205185_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2205185_23	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2205185_24	PHROG	phrog_88	major tail protein	tail
UHGV-2205185_24	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-2205185_24	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-2205185_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2205185_24	COG	COG5492	NA	NA
UHGV-2205185_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2205185_26	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2205185_26	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-2205185_26	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-2205185_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2205185_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2205185_26	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2205185_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2205185_27	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-2205185_27	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-2205185_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-2205185_27	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2205185_28	PHROG	phrog_13289	tail protein	tail
UHGV-2205185_28	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-2205185_28	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-2205185_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2205185_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2205185_28	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-2205185_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2205185_29	PHROG	phrog_11037	NA	unknown function
UHGV-2205185_29	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-2205185_29	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-2205185_29	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2205185_29	Structural annotation	PF18013	NA	NA
UHGV-2205185_30	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2205185_30	COG	COG4675	Phage tail collar domain	NA
UHGV-2205185_31	PHROG	phrog_15594	NA	unknown function
UHGV-2205185_31	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-2205185_31	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-2205185_32	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-2205185_33	PHROG	phrog_24103	NA	unknown function
UHGV-2205185_33	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2205185_33	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2205185_36	PHROG	phrog_199	holin	lysis
UHGV-2205185_36	UniRef90	UniRef90_A0A350VIW1	Holin	NA
UHGV-2205185_36	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-2205185_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2205185_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2205185_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2205185_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2205185_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2205185_37	PHROG	phrog_435	endolysin	lysis
UHGV-2205185_37	UniRef90	UniRef90_A0A355TJT7	MurNAc-LAA domain-containing protein	NA
UHGV-2205185_37	eggNOG-mapper	1469948.JPNB01000001_gene537	hmm pf01520	NA
UHGV-2205185_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2205185_37	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2205185_37	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA