UHGV-2205551

Genome information

Genome length 34,201 bps

CDS count 68

Completeness 92.24% (high-quality)

geNomad score 0.9160

Prediction confidence Confident

Genome information
Genome ID	UHGV-2205551
vOTU ID	vOTU-061801
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030039\|Ga0242799_100334\|provirus_152_34352
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9160
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.37
Jumbo phage	No

Genome content
Genome length	34,201 bps
GC content	34.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.25%
Average CDS length	469.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2205551_2	eggNOG-mapper	1232446.BAIE02000010_gene1963	NA	NA
UHGV-2205551_2	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-2205551_2	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-2205551_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2205551_4	UniRef90	UniRef90_A0A6B4QZ31	AP2 domain-containing protein	NA
UHGV-2205551_4	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-2205551_4	Pfam	PF21817	CapR homology domain	CapR
UHGV-2205551_4	Structural annotation	PF18337, PF00847	NA	NA
UHGV-2205551_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2205551_7	PHROG	phrog_3088	amidase	lysis
UHGV-2205551_7	UniRef90	UniRef90_A0A3E3AF17	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2205551_7	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2205551_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2205551_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2205551_7	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-2205551_8	PHROG	phrog_4105	NA	unknown function
UHGV-2205551_8	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-2205551_9	PHROG	phrog_1129	holin	lysis
UHGV-2205551_9	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-2205551_9	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2205551_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2205551_9	Structural annotation	PF06946	NA	NA
UHGV-2205551_13	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-2205551_14	PHROG	phrog_32322	NA	unknown function
UHGV-2205551_14	UniRef90	UniRef90_A0A7U9CLF4	Ig-like_bact domain-containing protein	NA
UHGV-2205551_14	eggNOG-mapper	1232446.BAIE02000002_gene840	NA	NA
UHGV-2205551_14	Pfam	PF13754	NA	Big_3_4
UHGV-2205551_14	Structural annotation	PF13754	NA	NA
UHGV-2205551_15	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2205551_15	PHROG	phrog_11157	NA	unknown function
UHGV-2205551_15	UniRef90	UniRef90_A0A1Y4N8R1	Big_13 domain-containing protein	NA
UHGV-2205551_15	eggNOG-mapper	1232446.BAIE02000002_gene839	NA	NA
UHGV-2205551_15	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2205551_15	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2205551_15	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2205551_15	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2205551_16	PHROG	phrog_6779	tail protein	tail
UHGV-2205551_16	eggNOG-mapper	1158601.I585_04168	NA	NA
UHGV-2205551_17	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2205551_17	PHROG	phrog_3088	amidase	lysis
UHGV-2205551_17	UniRef90	UniRef90_A0A7U9GPE9	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2205551_17	eggNOG-mapper	1216932.CM240_0314	Ami_2	NA
UHGV-2205551_17	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2205551_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2205551_18	PHROG	phrog_7064	tail protein	tail
UHGV-2205551_18	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2205551_19	PHROG	phrog_13564	minor tail protein	tail
UHGV-2205551_19	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-2205551_19	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-2205551_20	PHROG	phrog_23464	NA	unknown function
UHGV-2205551_20	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-2205551_20	eggNOG-mapper	1462526.BN990_01862	Phage tail tape measure protein TP901	NA
UHGV-2205551_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2205551_20	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-2205551_22	PHROG	phrog_88	major tail protein	tail
UHGV-2205551_22	UniRef90	UniRef90_U2KWM8	Phage major tail protein, phi13 family	NA
UHGV-2205551_22	eggNOG-mapper	411473.RUMCAL_01152	phage major tail protein, phi13 family	NA
UHGV-2205551_22	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2205551_23	UniRef90	UniRef90_A0A0B5APK7	Prophage pi2 protein 37	NA
UHGV-2205551_23	eggNOG-mapper	1145276.T479_19950	NA	NA
UHGV-2205551_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2205551_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-2205551_28	UniRef90	UniRef90_A0A1Y4N8Q7	Phage major capsid protein	NA
UHGV-2205551_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2205551_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2205551_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2205551_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2205551_29	KOfam	K06904	NA	NA
UHGV-2205551_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2205551_29	UniRef90	UniRef90_A0A7U9CLG0	HK97 family phage prohead protease	NA
UHGV-2205551_29	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-2205551_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2205551_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2205551_29	COG	COG3740	Phage head maturation protease	NA
UHGV-2205551_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2205551_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2205551_30	UniRef90	UniRef90_A0A7T3T3N1	Phage portal protein	NA
UHGV-2205551_30	eggNOG-mapper	469617.FUAG_01837	Phage portal protein	NA
UHGV-2205551_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2205551_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2205551_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2205551_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2205551_31	UniRef90	UniRef90_A0A1Y4N9K6	HNHc domain-containing protein	NA
UHGV-2205551_31	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-2205551_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2205551_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2205551_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2205551_32	UniRef90	UniRef90_A0A350RA59	Terminase large subunit	NA
UHGV-2205551_32	eggNOG-mapper	1536774.H70357_10615	Terminase	NA
UHGV-2205551_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2205551_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2205551_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2205551_34	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-2205551_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2205551_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2205551_38	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-2205551_38	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-2205551_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2205551_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-2205551_38	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2205551_39	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2205551_39	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-2205551_39	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-2205551_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2205551_39	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-2205551_40	PHROG	phrog_421	NA	unknown function
UHGV-2205551_40	UniRef90	UniRef90_UPI001D08F4DA	NA	NA
UHGV-2205551_40	eggNOG-mapper	1536769.P40081_01010	NA	NA
UHGV-2205551_40	Pfam	PF10979	NA	DUF2786
UHGV-2205551_40	COG	COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	NA
UHGV-2205551_41	PHROG	phrog_625	NA	unknown function
UHGV-2205551_41	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-2205551_41	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-2205551_41	Structural annotation	PF12961, NF002008, COG2028	NA	NA
UHGV-2205551_43	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2205551_43	UniRef90	UniRef90_UPI001C2BB323	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2205551_43	eggNOG-mapper	690850.Desaf_1950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2205551_43	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2205551_43	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2205551_43	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2205551_51	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2205551_51	PHROG	phrog_216	integrase	integration and excision
UHGV-2205551_51	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-2205551_51	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-2205551_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2205551_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2205551_51	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2205551_52	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-2205551_55	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2205551_55	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-2205551_55	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-2205551_55	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2205551_55	Structural annotation	PF13392, PF07453	NA	NA
UHGV-2205551_57	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2205551_57	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2205551_57	UniRef90	UniRef90_UPI001F38E41B	site-specific DNA-methyltransferase	NA
UHGV-2205551_57	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2205551_57	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2205551_57	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2205551_57	COG	COG0863	DNA modification methylase	NA
UHGV-2205551_58	UniRef90	UniRef90_UPI000E4FA7A6	site-specific DNA-methyltransferase	NA
UHGV-2205551_58	eggNOG-mapper	457405.FSDG_01570	DNA methylase	NA
UHGV-2205551_58	COG	COG0863	DNA modification methylase	NA
UHGV-2205551_58	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2205551_61	UniRef90	UniRef90_A0A3E3ACS2	DNA-binding protein	NA
UHGV-2205551_63	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2205551_63	UniRef90	UniRef90_UPI001D08DCF8	ORF6C domain-containing protein	NA
UHGV-2205551_63	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-2205551_63	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2205551_63	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2205551_63	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2205551_63	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2205551_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2205551_65	UniRef90	UniRef90_A0A7U9CJR6	HTH cro/C1-type domain-containing protein	NA
UHGV-2205551_65	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-2205551_65	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2205551_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2205551_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2205551_67	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2205551_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2205551_67	UniRef90	UniRef90_G9R0X7	HTH cro/C1-type domain-containing protein	NA
UHGV-2205551_67	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-2205551_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2205551_67	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2205551_68	PHROG	phrog_26910	NA	unknown function
UHGV-2205551_68	eggNOG-mapper	536232.CLM_1686	NA	NA