UHGV-2205920

Genome information

Genome length 50,441 bps

CDS count 86

Completeness 85.63% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-2205920
vOTU ID	vOTU-026507
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030032\|Ga0245332_100071\|provirus_113387_163827
BioSample	SAMEA3449382
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.34
Jumbo phage	No

Genome content
Genome length	50,441 bps
GC content	38.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	86.45%
Average CDS length	510.87 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2205920_1	KOfam	K14059	int; integrase	NA
UHGV-2205920_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2205920_1	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-2205920_1	eggNOG-mapper	411489.CLOL250_01458	Belongs to the 'phage' integrase family	NA
UHGV-2205920_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2205920_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2205920_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2205920_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2205920_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-2205920_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-2205920_2	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-2205920_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2205920_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-2205920_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2205920_2	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-2205920_3	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-2205920_4	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-2205920_4	AcrCatalog	cluster_47493	NA	NA
UHGV-2205920_5	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-2205920_7	PHROG	phrog_10714	NA	unknown function
UHGV-2205920_7	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-2205920_8	PHROG	phrog_8684	NA	unknown function
UHGV-2205920_8	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-2205920_8	Pfam	PF09643	YopX protein	YopX
UHGV-2205920_10	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2205920_10	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-2205920_10	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-2205920_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2205920_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2205920_10	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-2205920_11	PHROG	phrog_38832	NA	unknown function
UHGV-2205920_11	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-2205920_11	Structural annotation	PF18597	NA	NA
UHGV-2205920_12	PHROG	phrog_22292	NA	unknown function
UHGV-2205920_17	PHROG	phrog_9804	NA	unknown function
UHGV-2205920_17	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-2205920_17	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-2205920_17	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2205920_17	Structural annotation	PF11417	NA	NA
UHGV-2205920_18	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2205920_18	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-2205920_18	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-2205920_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2205920_18	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2205920_19	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2205920_19	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-2205920_19	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-2205920_19	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-2205920_20	UniRef90	UniRef90_A0A1Y4R9D2	Radical SAM protein	NA
UHGV-2205920_20	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2205920_20	COG	COG1180	Pyruvate-formate lyase-activating enzyme	NA
UHGV-2205920_20	Structural annotation	PF04055, MF_01225_A, TIGR04303, COG0535	NA	NA
UHGV-2205920_21	PHROG	phrog_19106	NA	unknown function
UHGV-2205920_21	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-2205920_21	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2205920_21	Structural annotation	TIGR01453	NA	NA
UHGV-2205920_22	PHROG	phrog_20593	NA	unknown function
UHGV-2205920_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2205920_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2205920_23	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-2205920_23	eggNOG-mapper	1235793.C809_02091	Single-strand binding protein family	NA
UHGV-2205920_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2205920_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2205920_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2205920_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2205920_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2205920_24	PHROG	phrog_4400	NA	unknown function
UHGV-2205920_24	UniRef90	UniRef90_A8ATU1	Gp53	NA
UHGV-2205920_24	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-2205920_24	dbAPIS	APIS056	NA	NA
UHGV-2205920_24	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-2205920_25	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2205920_25	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-2205920_25	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2205920_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2205920_25	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-2205920_26	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2205920_26	UniRef90	UniRef90_A0A416JIG7	MBL fold metallo-hydrolase	NA
UHGV-2205920_26	eggNOG-mapper	443254.Marpi_0302	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2205920_26	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2205920_27	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2205920_27	UniRef90	UniRef90_C0CR26	HNHc domain-containing protein	NA
UHGV-2205920_27	eggNOG-mapper	1500386.A0A060AFF3_9CAUD	HNH endonuclease	NA
UHGV-2205920_27	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2205920_27	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2205920_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2205920_27	Structural annotation	PF13392, PF07463	NA	NA
UHGV-2205920_28	PHROG	phrog_25456	NA	unknown function
UHGV-2205920_29	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2205920_29	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-2205920_29	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-2205920_29	Pfam	PF03837	RecT family	RecT
UHGV-2205920_29	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2205920_29	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2205920_29	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2205920_33	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2205920_33	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2205920_33	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-2205920_33	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-2205920_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2205920_33	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2205920_36	UniRef90	UniRef90_UPI0008FDD6D4	G5 domain-containing protein	NA
UHGV-2205920_36	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-2205920_36	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-2205920_38	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2205920_38	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-2205920_38	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-2205920_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2205920_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2205920_38	COG	COG3617	Prophage antirepressor	NA
UHGV-2205920_38	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2205920_39	COG	COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	NA
UHGV-2205920_41	UniRef90	UniRef90_A0A412RQX5	XRE family transcriptional regulator	NA
UHGV-2205920_41	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-2205920_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2205920_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2205920_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2205920_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2205920_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2205920_42	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-2205920_42	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-2205920_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2205920_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2205920_42	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2205920_43	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-2205920_46	PHROG	phrog_1419	tail protein	tail
UHGV-2205920_46	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-2205920_47	PHROG	phrog_6616	tail protein	tail
UHGV-2205920_47	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-2205920_47	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-2205920_47	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2205920_47	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2205920_48	PHROG	phrog_1194	NA	unknown function
UHGV-2205920_48	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-2205920_48	Pfam	PF20458	NA	DUF6711
UHGV-2205920_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2205920_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2205920_49	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-2205920_49	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2205920_50	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-2205920_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-2205920_51	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-2205920_51	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2205920_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2205920_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2205920_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2205920_52	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2205920_52	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-2205920_52	Pfam	PF07374	NA	DUF1492
UHGV-2205920_52	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2205920_52	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2205920_53	PHROG	phrog_9529	NA	unknown function
UHGV-2205920_53	UniRef90	UniRef90_UPI000836A084	NA	NA
UHGV-2205920_53	eggNOG-mapper	202752.JL53_03720	NA	NA
UHGV-2205920_53	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-2205920_53	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-2205920_54	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2205920_54	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-2205920_54	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-2205920_54	COG	COG5410	NA	NA
UHGV-2205920_54	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2205920_55	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-2205920_55	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-2205920_55	UniRef90	UniRef90_A0A8D9PG28	tRNA-splicing ligase	NA
UHGV-2205920_55	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-2205920_55	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-2205920_55	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-2205920_55	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-2205920_56	PHROG	phrog_2316	NA	unknown function
UHGV-2205920_56	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-2205920_56	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-2205920_56	Pfam	PF16475	NA	DUF5052
UHGV-2205920_56	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-2205920_57	PHROG	phrog_1233	NA	unknown function
UHGV-2205920_57	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-2205920_57	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-2205920_57	Structural annotation	PF13058	NA	NA
UHGV-2205920_64	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-2205920_64	Structural annotation	PF05225, COG2886	NA	NA
UHGV-2205920_65	PHROG	phrog_22444	NA	unknown function
UHGV-2205920_65	UniRef90	UniRef90_UPI001CC2634F	helix-turn-helix domain-containing protein	NA
UHGV-2205920_65	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-2205920_65	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2205920_66	Structural annotation	PF12990	NA	NA
UHGV-2205920_68	PHROG	phrog_236	nucleotide kinase	other
UHGV-2205920_68	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-2205920_68	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-2205920_68	Pfam	PF11753	NA	DUF3310
UHGV-2205920_68	Structural annotation	PF11753	NA	NA
UHGV-2205920_69	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-2205920_70	PHROG	phrog_31631	NA	unknown function
UHGV-2205920_70	eggNOG-mapper	1235802.C823_04520	NA	NA
UHGV-2205920_74	eggNOG-mapper	658659.HMPREF0983_00103	NA	NA
UHGV-2205920_74	Structural annotation	PF18847, NF002761, COG1847	NA	NA
UHGV-2205920_79	PHROG	phrog_1233	NA	unknown function
UHGV-2205920_79	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-2205920_80	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-2205920_81	PHROG	phrog_20016	NA	unknown function
UHGV-2205920_81	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2205920_81	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2205920_81	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2205920_82	PHROG	phrog_16490	NA	unknown function
UHGV-2205920_82	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2205920_83	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-2205920_84	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-2205920_86	KOfam	K03480	glcT; transcriptional antiterminator	NA
UHGV-2205920_86	UniRef90	UniRef90_A0A173ZSS6	Levansucrase and sucrase synthesis operon antiterminator	NA
UHGV-2205920_86	eggNOG-mapper	1226325.HMPREF1548_04360	transcriptional antiterminator	NA
UHGV-2205920_86	Pfam	PF00874	PRD domain	PRD
UHGV-2205920_86	COG	COG3711	Transcriptional antiterminator	NA