UHGV-2229571

Genome information

Genome length 33,748 bps

CDS count 45

Completeness 71.81% (medium-quality)

geNomad score 0.9664

Prediction confidence Confident

Genome information
Genome ID	UHGV-2229571
vOTU ID	vOTU-015612
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	7000000333\|SRS050925_LANL_scaffold_7412\|provirus_839_34586
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9664
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.86
Jumbo phage	No

Genome content
Genome length	33,748 bps
GC content	52.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.48%
Average CDS length	712.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2229571_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2229571_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2229571_1	UniRef90	UniRef90_UPI00050A1230	site-specific integrase	NA
UHGV-2229571_1	eggNOG-mapper	1347393.HG726026_gene2633	Arm DNA-binding domain	NA
UHGV-2229571_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2229571_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2229571_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2229571_1	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2229571_2	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2229571_2	UniRef90	UniRef90_A0A2W7NDT8	Putative RNA binding protein YcfA (HicA-like mRNA interferase family)	NA
UHGV-2229571_2	eggNOG-mapper	1123058.KB894251_gene2374	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2229571_2	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2229571_2	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2229571_2	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2229571_3	UniRef90	UniRef90_A0A379MRN8	HTH cro/C1-type domain-containing protein	NA
UHGV-2229571_3	eggNOG-mapper	1123058.KB894251_gene2375	PFAM Uncharacterised protein family UPF0150	NA
UHGV-2229571_3	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2229571_4	PHROG	phrog_26448	NA	unknown function
UHGV-2229571_4	Pfam	PF20647	NA	DUF6808
UHGV-2229571_4	Structural annotation	PF20647	NA	NA
UHGV-2229571_5	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2229571_5	PHROG	phrog_894	endolysin	lysis
UHGV-2229571_5	UniRef90	UniRef90_A0A143XLQ9	Peptidase M15	NA
UHGV-2229571_5	eggNOG-mapper	547042.BACCOPRO_00949	Peptidase M15	NA
UHGV-2229571_5	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2229571_5	COG	COG3108	NA	NA
UHGV-2229571_5	Structural annotation	PF08291, COG3108	NA	NA
UHGV-2229571_6	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-2229571_8	Structural annotation	PF02185	NA	NA
UHGV-2229571_9	Structural annotation	PF07603	NA	NA
UHGV-2229571_12	UniRef90	UniRef90_UPI000AF88608	carboxypeptidase-like regulatory domain-containing protein	NA
UHGV-2229571_12	eggNOG-mapper	1433126.BN938_0140	NA	NA
UHGV-2229571_13	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-2229571_13	UniRef90	UniRef90_UPI000C15DCE7	phage tail length tape measure family protein	NA
UHGV-2229571_13	eggNOG-mapper	1433126.BN938_0515	domain protein	NA
UHGV-2229571_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2229571_13	COG	COG5283	Phage-related tail protein	NA
UHGV-2229571_13	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-2229571_16	PHROG	phrog_1407	major tail protein	tail
UHGV-2229571_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2229571_17	UniRef90	UniRef90_UPI00050A21EA	NA	NA
UHGV-2229571_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2229571_18	UniRef90	UniRef90_UPI00050A0E9A	HK97 gp10 family phage protein	NA
UHGV-2229571_18	eggNOG-mapper	1433126.BN938_0520	NA	NA
UHGV-2229571_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2229571_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2229571_18	Structural annotation	PF06763, TIGR01725	NA	NA
UHGV-2229571_19	UniRef90	UniRef90_UPI00050A2DE2	phage head closure protein	NA
UHGV-2229571_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2229571_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2229571_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2229571_20	PHROG	phrog_442	head-tail adaptor	connector
UHGV-2229571_20	UniRef90	UniRef90_UPI000C15B912	phage gp6-like head-tail connector protein	NA
UHGV-2229571_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2229571_21	UniRef90	UniRef90_UPI00050A3463	phage major capsid protein	NA
UHGV-2229571_21	eggNOG-mapper	1121937.AUHJ01000007_gene1940	Phage capsid family	NA
UHGV-2229571_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2229571_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2229571_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2229571_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2229571_22	KOfam	K06904	NA	NA
UHGV-2229571_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2229571_22	UniRef90	UniRef90_UPI00068D4ECB	HK97 family phage prohead protease	NA
UHGV-2229571_22	eggNOG-mapper	1120971.AUCA01000066_gene594	Caudovirus prohead serine protease	NA
UHGV-2229571_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2229571_22	COG	COG3740	Phage head maturation protease	NA
UHGV-2229571_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2229571_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-2229571_23	UniRef90	UniRef90_UPI00050A32C5	phage portal protein	NA
UHGV-2229571_23	eggNOG-mapper	1235793.C809_04329	Phage portal protein	NA
UHGV-2229571_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2229571_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2229571_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2229571_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2229571_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2229571_25	UniRef90	UniRef90_UPI0006903A4A	terminase large subunit	NA
UHGV-2229571_25	eggNOG-mapper	1453501.JELR01000001_gene2531	Phage Terminase	NA
UHGV-2229571_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2229571_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2229571_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2229571_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2229571_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2229571_26	UniRef90	UniRef90_UPI0009DDFF3A	phage terminase small subunit P27 family	NA
UHGV-2229571_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2229571_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2229571_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2229571_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2229571_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2229571_27	PHROG	phrog_1	integrase	integration and excision
UHGV-2229571_27	UniRef90	UniRef90_UPI0018D223EE	tyrosine-type recombinase/integrase	NA
UHGV-2229571_27	eggNOG-mapper	1433126.BN938_0085	Belongs to the 'phage' integrase family	NA
UHGV-2229571_27	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2229571_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2229571_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2229571_27	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-2229571_29	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-2229571_30	PHROG	phrog_8684	NA	unknown function
UHGV-2229571_30	UniRef90	UniRef90_UPI0011071E51	YopX family protein	NA
UHGV-2229571_30	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-2229571_30	Pfam	PF09643	YopX protein	YopX
UHGV-2229571_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2229571_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2229571_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2229571_34	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2229571_34	UniRef90	UniRef90_UPI001D05E388	DNA cytosine methyltransferase	NA
UHGV-2229571_34	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2229571_34	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2229571_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2229571_34	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2229571_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2229571_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2229571_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2229571_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2229571_35	UniRef90	UniRef90_A0A5B5VP29	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2229571_35	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2229571_35	PADLOC	SspD_00001	SspD	SSP
UHGV-2229571_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2229571_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2229571_35	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2229571_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2229571_36	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2229571_36	UniRef90	UniRef90_UPI001B39CDDA	site-specific DNA-methyltransferase	NA
UHGV-2229571_36	eggNOG-mapper	1123304.AQYA01000037_gene207	DNA methylase	NA
UHGV-2229571_36	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2229571_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2229571_36	COG	COG0863	DNA modification methylase	NA
UHGV-2229571_36	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2229571_38	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2229571_38	UniRef90	UniRef90_A0A410WDR4	Replication protein O	NA
UHGV-2229571_38	eggNOG-mapper	411477.PARMER_02072	DnaD domain protein	NA
UHGV-2229571_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2229571_38	Structural annotation	PF04703, NF033788, COG1846	NA	NA
UHGV-2229571_39	PHROG	phrog_415	polynucleotide kinase	other
UHGV-2229571_39	UniRef90	UniRef90_A0A350MNV4	3'-phosphatase (Fragment)	NA
UHGV-2229571_39	eggNOG-mapper	1122182.KB903833_gene5604	AAA domain	NA
UHGV-2229571_39	COG	COG4639	Predicted kinase	NA
UHGV-2229571_39	Structural annotation	PF08235, MF_01250, TIGR01680, COG2503	NA	NA
UHGV-2229571_40	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-2229571_40	Structural annotation	PF02796, NF040785	NA	NA
UHGV-2229571_41	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2229571_42	KOfam	K11618	liaR; two-component system, NarL family, response regulator LiaR	NA
UHGV-2229571_42	UniRef90	UniRef90_UPI00050A1875	helix-turn-helix transcriptional regulator	NA
UHGV-2229571_42	eggNOG-mapper	1235803.C825_03381	helix_turn_helix, Lux Regulon	NA
UHGV-2229571_42	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2229571_42	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-2229571_43	eggNOG-mapper	1284775.HMPREF1640_07290	NA	NA
UHGV-2229571_43	Structural annotation	PF19555	NA	NA
UHGV-2229571_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2229571_44	UniRef90	UniRef90_A0A4Y1WPK5	Transcriptional regulator	NA
UHGV-2229571_44	eggNOG-mapper	1121100.JCM6294_510	Transcriptional regulator	NA
UHGV-2229571_44	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-2229571_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2229571_44	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2229571_44	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA