UHGV-2233402

Genome information

Genome length 32,948 bps

CDS count 44

Completeness 76.72% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-2233402
vOTU ID	vOTU-017400
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	7000000320\|SRS063040_Baylor_scaffold_2230\|provirus_4352_37299
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.78
Jumbo phage	No

Genome content
Genome length	32,948 bps
GC content	37.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.15%
Average CDS length	692.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2233402_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2233402_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2233402_1	UniRef90	UniRef90_A0A350S6L5	Recombinase family protein	NA
UHGV-2233402_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2233402_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2233402_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2233402_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2233402_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2233402_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2233402_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2233402_2	UniRef90	UniRef90_UPI001C03809A	Abi family protein	NA
UHGV-2233402_2	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-2233402_2	PADLOC	AbiD	AbiD	Abi
UHGV-2233402_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2233402_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2233402_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2233402_3	PHROG	phrog_19315	NA	unknown function
UHGV-2233402_3	UniRef90	UniRef90_A0A3A6EGE6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2233402_3	eggNOG-mapper	742738.HMPREF9460_01346	IrrE N-terminal-like domain	NA
UHGV-2233402_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2233402_3	COG	COG1592	Rubrerythrin	NA
UHGV-2233402_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2233402_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2233402_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2233402_4	UniRef90	UniRef90_A0A841R4B0	Transcriptional regulator with XRE-family HTH domain	NA
UHGV-2233402_4	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-2233402_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2233402_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2233402_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2233402_5	UniRef90	UniRef90_A0A1I5EN34	Helix-turn-helix	NA
UHGV-2233402_5	eggNOG-mapper	1034347.CAHJ01000051_gene30	NA	NA
UHGV-2233402_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2233402_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2233402_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2233402_7	UniRef90	UniRef90_UPI0015FC35E0	phage antirepressor KilAC domain-containing protein	NA
UHGV-2233402_7	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-2233402_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2233402_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2233402_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2233402_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-2233402_11	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2233402_11	UniRef90	UniRef90_A0A1I2QK58	Transcriptional regulator, GntR family	NA
UHGV-2233402_11	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-2233402_11	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-2233402_12	PHROG	phrog_9804	NA	unknown function
UHGV-2233402_12	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-2233402_12	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-2233402_12	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2233402_12	Structural annotation	PF11417	NA	NA
UHGV-2233402_14	eggNOG-mapper	1235800.C819_02246	NA	NA
UHGV-2233402_15	PHROG	phrog_20441	NA	unknown function
UHGV-2233402_15	UniRef90	UniRef90_UPI001F1E84B4	NA	NA
UHGV-2233402_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2233402_16	UniRef90	UniRef90_A0A3A9EXN8	RNA polymerase subunit sigma-70	NA
UHGV-2233402_16	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-2233402_16	Structural annotation	PF02996	NA	NA
UHGV-2233402_17	PHROG	phrog_8680	NA	unknown function
UHGV-2233402_17	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-2233402_17	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2233402_17	Pfam	PF14386	NA	DUF4417
UHGV-2233402_17	Structural annotation	PF14386	NA	NA
UHGV-2233402_19	PHROG	phrog_9479	NA	unknown function
UHGV-2233402_19	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-2233402_19	Structural annotation	PF15529	NA	NA
UHGV-2233402_20	PHROG	phrog_33130	NA	unknown function
UHGV-2233402_20	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2233402_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2233402_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2233402_22	UniRef90	UniRef90_UPI000E54849E	PBSX family phage terminase large subunit	NA
UHGV-2233402_22	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2233402_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2233402_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2233402_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2233402_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2233402_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2233402_22	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2233402_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-2233402_23	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-2233402_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2233402_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2233402_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2233402_24	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-2233402_24	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2233402_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2233402_24	Structural annotation	PF11114	NA	NA
UHGV-2233402_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2233402_25	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-2233402_25	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-2233402_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2233402_25	COG	COG2369	NA	NA
UHGV-2233402_25	Structural annotation	PF06152	NA	NA
UHGV-2233402_26	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-2233402_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2233402_27	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-2233402_27	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2233402_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2233402_27	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2233402_28	PHROG	phrog_283	major head protein	head and packaging
UHGV-2233402_28	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-2233402_28	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-2233402_28	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2233402_28	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2233402_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2233402_30	PHROG	phrog_3366	NA	unknown function
UHGV-2233402_30	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2233402_30	Pfam	PF20536	NA	DUF6751
UHGV-2233402_30	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2233402_31	PHROG	phrog_3266	tail completion	connector
UHGV-2233402_31	eggNOG-mapper	1120746.CCNL01000014_gene2101	NA	NA
UHGV-2233402_31	Structural annotation	PF12691	NA	NA
UHGV-2233402_32	PHROG	phrog_3099	NA	unknown function
UHGV-2233402_32	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-2233402_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2233402_33	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-2233402_33	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-2233402_33	Structural annotation	PF10666	NA	NA
UHGV-2233402_34	PHROG	phrog_706	NA	unknown function
UHGV-2233402_34	UniRef90	UniRef90_UPI000E4C3E72	Gp15 family bacteriophage protein	NA
UHGV-2233402_34	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2233402_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2233402_34	Structural annotation	PF06854	NA	NA
UHGV-2233402_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2233402_35	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-2233402_35	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-2233402_35	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2233402_36	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-2233402_36	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2233402_37	PHROG	phrog_13879	NA	unknown function
UHGV-2233402_37	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2233402_37	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2233402_39	PHROG	phrog_18725	NA	unknown function
UHGV-2233402_39	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-2233402_40	PHROG	phrog_1980	tail fiber protein	tail
UHGV-2233402_40	UniRef90	UniRef90_UPI000E51CC95	tail fiber domain-containing protein	NA
UHGV-2233402_40	eggNOG-mapper	397288.C806_00116	NA	NA
UHGV-2233402_40	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2233402_41	PHROG	phrog_199	holin	lysis
UHGV-2233402_41	UniRef90	UniRef90_A0A3R6Q4W7	Holin	NA
UHGV-2233402_41	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-2233402_41	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2233402_41	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2233402_41	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2233402_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2233402_42	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2233402_42	PHROG	phrog_35436	amidase	lysis
UHGV-2233402_42	UniRef90	UniRef90_UPI001959A1CC	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2233402_42	eggNOG-mapper	1235798.C817_04599	Ami_2	NA
UHGV-2233402_42	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2233402_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2233402_42	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2233402_42	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-2233402_43	eggNOG-mapper	1220589.CD32_01770	NA	NA
UHGV-2233402_43	AcrCatalog	cluster_38765	NA	NA
UHGV-2233402_43	Structural annotation	PF15931, NF001462, COG2974	NA	NA