UHGV-2235645

Genome information

Genome length 38,583 bps

CDS count 47

Completeness 99.21% (high-quality)

geNomad score 0.9680

Prediction confidence Confident

Genome information
Genome ID	UHGV-2235645
vOTU ID	vOTU-011594
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	7000000532\|SRS011529_WUGC_scaffold_2008\|provirus_34693_73275
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9680
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	100.01
Jumbo phage	No

Genome content
Genome length	38,583 bps
GC content	41.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.63%
Average CDS length	764.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2235645_1	KOfam	K14059	int; integrase	NA
UHGV-2235645_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2235645_1	UniRef90	UniRef90_E4LAC6	Site-specific recombinase, phage integrase family	NA
UHGV-2235645_1	eggNOG-mapper	910314.HMPREF9220_0756	Belongs to the 'phage' integrase family	NA
UHGV-2235645_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2235645_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2235645_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2235645_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2235645_3	Pfam	PF19839	Ribbon-helix-helix protein	RHH_9
UHGV-2235645_3	COG	COG3905	Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain	NA
UHGV-2235645_5	PHROG	phrog_5162	NA	unknown function
UHGV-2235645_7	PHROG	phrog_21575	NA	unknown function
UHGV-2235645_10	PHROG	phrog_7964	NA	unknown function
UHGV-2235645_10	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-2235645_10	eggNOG-mapper	1094560.ME9_01372	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-2235645_10	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2235645_10	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2235645_10	Structural annotation	NF040481	NA	NA
UHGV-2235645_11	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-2235645_11	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2235645_11	UniRef90	UniRef90_E4LAB3	DNA-directed RNA polymerase	NA
UHGV-2235645_11	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-2235645_11	Pfam	PF14700	DNA-directed RNA polymerase N-terminal	RPOL_N
UHGV-2235645_11	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-2235645_11	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-2235645_11	Structural annotation	PF00940, PF14700, NF011539, COG5108	NA	NA
UHGV-2235645_14	PHROG	phrog_21026	NA	unknown function
UHGV-2235645_14	eggNOG-mapper	526218.Sterm_0798	NA	NA
UHGV-2235645_18	PHROG	phrog_10602	nucleotide kinase	other
UHGV-2235645_18	UniRef90	UniRef90_A0A413R0M9	NA	NA
UHGV-2235645_18	eggNOG-mapper	1432658.V5UQP0_9CAUD	NA	NA
UHGV-2235645_18	Pfam	PF11753	NA	DUF3310
UHGV-2235645_18	Structural annotation	PF11753	NA	NA
UHGV-2235645_20	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2235645_20	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2235645_20	UniRef90	UniRef90_A0A1M6MEY3	dUTP pyrophosphatase	NA
UHGV-2235645_20	eggNOG-mapper	862517.HMPREF9225_1247	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2235645_20	Pfam	PF00692	dUTPase	dUTPase
UHGV-2235645_20	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2235645_21	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-2235645_21	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2235645_21	UniRef90	UniRef90_UPI0010327CA7	NA	NA
UHGV-2235645_21	eggNOG-mapper	910314.HMPREF9220_0740	NA	NA
UHGV-2235645_21	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-2235645_21	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-2235645_22	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-2235645_22	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2235645_22	UniRef90	UniRef90_A0A2Z2U7X4	Endonuclease-like protein	NA
UHGV-2235645_22	eggNOG-mapper	913183.E5RV06_9CAUD	deoxyribonuclease IV (phage-T4-induced) activity	NA
UHGV-2235645_22	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-2235645_22	Structural annotation	PF05367, COG1787	NA	NA
UHGV-2235645_23	UniRef90	UniRef90_E4LAA8	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2235645_23	Structural annotation	PF01510, MF_04111	NA	NA
UHGV-2235645_24	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-2235645_24	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2235645_24	UniRef90	UniRef90_A0A1M6MES9	Twinkle protein	NA
UHGV-2235645_24	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-2235645_24	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-2235645_24	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2235645_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2235645_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-2235645_24	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-2235645_24	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-2235645_25	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-2235645_25	PHROG	phrog_15971	DNA polymerase I	DNA, RNA and nucleotide metabolism
UHGV-2235645_25	UniRef90	UniRef90_A0A1M6MFE6	DNA-directed DNA polymerase	NA
UHGV-2235645_25	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-2235645_25	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-2235645_25	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2235645_25	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2235645_25	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-2235645_26	Structural annotation	PF18129, MF_00613, NF002745, COG2139	NA	NA
UHGV-2235645_27	PHROG	phrog_1334	NA	unknown function
UHGV-2235645_27	Structural annotation	PF21715	NA	NA
UHGV-2235645_28	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-2235645_28	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-2235645_28	UniRef90	UniRef90_E4LAA3	Putative Exodeoxyribonuclease	NA
UHGV-2235645_28	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-2235645_28	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-2235645_28	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-2235645_28	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-2235645_29	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-2235645_29	Structural annotation	PF09390, MF_01127, NF041716, COG0456	NA	NA
UHGV-2235645_30	Structural annotation	PF10911	NA	NA
UHGV-2235645_31	Pfam	PF17570	Bacteriophage T7-like, protein 6.7	T7-like_gp67
UHGV-2235645_32	PHROG	phrog_1320	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2235645_33	PHROG	phrog_449	head-tail adaptor	connector
UHGV-2235645_33	UniRef90	UniRef90_E4LA99	Head-to-tail joining protein	NA
UHGV-2235645_33	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-2235645_33	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-2235645_33	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2235645_34	PHROG	phrog_1052	head assembly	head and packaging
UHGV-2235645_34	UniRef90	UniRef90_E4LA98	Phage T7 capsid assembly protein	NA
UHGV-2235645_34	eggNOG-mapper	910314.HMPREF9220_0728	Phage T7 capsid assembly protein	NA
UHGV-2235645_34	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-2235645_34	Structural annotation	PF05396	NA	NA
UHGV-2235645_35	PHROG	phrog_267	major head protein	head and packaging
UHGV-2235645_35	UniRef90	UniRef90_UPI001032B69C	phage capsid protein	NA
UHGV-2235645_35	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-2235645_35	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-2235645_35	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2235645_36	PHROG	phrog_446	tail protein	tail
UHGV-2235645_36	UniRef90	UniRef90_UPI001032D6E0	phage tail protein	NA
UHGV-2235645_36	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-2235645_36	Pfam	PF17212	Tail tubular protein	Tube
UHGV-2235645_36	Structural annotation	PF17212	NA	NA
UHGV-2235645_37	PHROG	phrog_457	tail protein	tail
UHGV-2235645_37	UniRef90	UniRef90_F1D037	Tail tubular protein B	NA
UHGV-2235645_37	eggNOG-mapper	910314.HMPREF9220_0725	NA	NA
UHGV-2235645_37	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-2235645_38	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-2235645_38	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-2235645_38	Structural annotation	PF13420, MF_02210, NF040504, COG0456	NA	NA
UHGV-2235645_39	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-2235645_39	eggNOG-mapper	1262914.BN533_00636	NA	NA
UHGV-2235645_40	eggNOG-mapper	1262914.BN533_00637	NA	NA
UHGV-2235645_40	Structural annotation	MF_04122	NA	NA
UHGV-2235645_41	PHROG	phrog_342	internal virion protein with endolysin domain	head and packaging
UHGV-2235645_41	UniRef90	UniRef90_A0A1M6MGY6	Phage_lysozyme2 domain-containing protein	NA
UHGV-2235645_41	eggNOG-mapper	910314.HMPREF9220_0721	NA	NA
UHGV-2235645_41	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2235645_41	Structural annotation	MF_04121, NF038016, COG1705	NA	NA
UHGV-2235645_43	PHROG	phrog_6256	tail fiber protein	tail
UHGV-2235645_43	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-2235645_43	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-2235645_43	Structural annotation	PF03906, COG5448	NA	NA
UHGV-2235645_45	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-2235645_45	PHROG	phrog_3513	endolysin	lysis
UHGV-2235645_45	UniRef90	UniRef90_E4LA87	Putative muramidase-2	NA
UHGV-2235645_45	eggNOG-mapper	910314.HMPREF9220_0717	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2235645_45	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2235645_45	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2235645_45	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-2235645_47	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2235645_47	UniRef90	UniRef90_UPI0018D58E1D	phage terminase large subunit	NA
UHGV-2235645_47	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-2235645_47	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-2235645_47	COG	COG5410	NA	NA
UHGV-2235645_47	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-2235645_47	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA