UHGV-2241122

Genome information

Genome length 34,842 bps

CDS count 50

Completeness 92.46% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-2241122
vOTU ID	vOTU-008205
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	7000000740\|SRS064276_LANL_scaffold_40179\|provirus_28691_63532
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.7
Jumbo phage	No

Genome content
Genome length	34,842 bps
GC content	45.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.90%
Average CDS length	651.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2241122_2	PHROG	phrog_9659	NA	unknown function
UHGV-2241122_2	UniRef90	UniRef90_UPI000A26FDC2	NA	NA
UHGV-2241122_2	Structural annotation	PF15956	NA	NA
UHGV-2241122_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2241122_3	PHROG	phrog_291	endolysin	lysis
UHGV-2241122_3	UniRef90	UniRef90_A0A1C6IMI8	Autolytic lysozyme	NA
UHGV-2241122_3	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-2241122_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2241122_3	Pfam	PF01476	LysM domain	LysM
UHGV-2241122_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2241122_3	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2241122_4	PHROG	phrog_1863	NA	unknown function
UHGV-2241122_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2241122_5	PHROG	phrog_13256	NA	unknown function
UHGV-2241122_5	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-2241122_6	PHROG	phrog_134	NA	unknown function
UHGV-2241122_6	UniRef90	UniRef90_A0A374ERE4	XkdX family protein	NA
UHGV-2241122_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2241122_6	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2241122_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2241122_8	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-2241122_8	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2241122_8	Structural annotation	PF20942	NA	NA
UHGV-2241122_10	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2241122_10	UniRef90	UniRef90_UPI000B8A255B	polymer-forming cytoskeletal protein	NA
UHGV-2241122_10	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2241122_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2241122_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2241122_12	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-2241122_12	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2241122_12	COG	COG5283	Phage-related tail protein	NA
UHGV-2241122_13	PHROG	phrog_8355	NA	unknown function
UHGV-2241122_13	UniRef90	UniRef90_A0A1C6EB03	Bacteriophage Gp15 protein	NA
UHGV-2241122_13	eggNOG-mapper	1232449.BAHV02000018_gene1518	Bacteriophage Gp15 protein	NA
UHGV-2241122_14	PHROG	phrog_8300	NA	unknown function
UHGV-2241122_14	eggNOG-mapper	1507.HMPREF0262_00213	NA	NA
UHGV-2241122_14	Structural annotation	PF06896	NA	NA
UHGV-2241122_15	PHROG	phrog_820	major tail protein	tail
UHGV-2241122_15	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2241122_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2241122_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2241122_16	UniRef90	UniRef90_UPI001BEB3BC5	minor capsid protein	NA
UHGV-2241122_16	eggNOG-mapper	717606.PaecuDRAFT_3128	NA	NA
UHGV-2241122_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2241122_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2241122_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2241122_17	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-2241122_18	PHROG	phrog_8710	NA	unknown function
UHGV-2241122_18	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-2241122_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2241122_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2241122_19	eggNOG-mapper	1507.HMPREF0262_01180	NA	NA
UHGV-2241122_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-2241122_20	UniRef90	UniRef90_A0A1Y4R5U9	Phage capsid protein	NA
UHGV-2241122_20	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2241122_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2241122_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2241122_22	UniRef90	UniRef90_R6QRM6	Minor capsid protein	NA
UHGV-2241122_22	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-2241122_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2241122_23	UniRef90	UniRef90_A0A174Z867	Phage minor capsid protein 2	NA
UHGV-2241122_23	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-2241122_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2241122_23	COG	COG2369	NA	NA
UHGV-2241122_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2241122_24	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-2241122_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2241122_24	COG	COG2369	NA	NA
UHGV-2241122_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-2241122_25	UniRef90	UniRef90_A0A374HLV7	Phage portal protein	NA
UHGV-2241122_25	eggNOG-mapper	717606.PaecuDRAFT_3119	NA	NA
UHGV-2241122_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2241122_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2241122_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2241122_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2241122_26	UniRef90	UniRef90_A0A373XSH6	Terminase	NA
UHGV-2241122_26	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-2241122_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2241122_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2241122_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2241122_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2241122_27	UniRef90	UniRef90_A0A374HNN6	Terminase small subunit	NA
UHGV-2241122_27	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2241122_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2241122_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2241122_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2241122_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2241122_29	UniRef90	UniRef90_A0A374HLM1	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2241122_29	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-2241122_29	Structural annotation	PF07374	NA	NA
UHGV-2241122_30	PHROG	phrog_22543	NA	unknown function
UHGV-2241122_31	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2241122_31	UniRef90	UniRef90_UPI00189DC125	NA	NA
UHGV-2241122_31	eggNOG-mapper	2754.EH55_06950	NA	NA
UHGV-2241122_31	Pfam	PF12961	NA	DUF3850
UHGV-2241122_31	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-2241122_32	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-2241122_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2241122_33	UniRef90	UniRef90_A0A373Y8T3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2241122_33	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2241122_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2241122_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2241122_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2241122_34	PHROG	phrog_16687	NA	unknown function
UHGV-2241122_34	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-2241122_35	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2241122_35	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2241122_35	UniRef90	UniRef90_A0A1C6E992	Regulatory protein repA	NA
UHGV-2241122_35	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2241122_35	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2241122_35	Pfam	PF13481	AAA domain	AAA_25
UHGV-2241122_35	COG	COG3598	RecA-family ATPase	NA
UHGV-2241122_35	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2241122_36	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2241122_36	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2241122_36	UniRef90	UniRef90_A0A1C6E943	Type-1 restriction enzyme R protein	NA
UHGV-2241122_36	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-2241122_36	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2241122_36	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2241122_36	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2241122_36	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2241122_36	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2241122_37	PHROG	phrog_2698	NA	unknown function
UHGV-2241122_37	UniRef90	UniRef90_UPI001D0882DA	NA	NA
UHGV-2241122_37	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-2241122_37	Structural annotation	PF17426, NF005674	NA	NA
UHGV-2241122_38	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2241122_38	UniRef90	UniRef90_UPI000F52E538	ATP-binding protein	NA
UHGV-2241122_38	eggNOG-mapper	1262914.BN533_01949	AAA domain	NA
UHGV-2241122_38	Pfam	PF13479	AAA domain	AAA_24
UHGV-2241122_38	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2241122_39	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2241122_39	PHROG	phrog_1499	NA	unknown function
UHGV-2241122_39	UniRef90	UniRef90_A0A1C6E8X2	Chromosome segregation protein	NA
UHGV-2241122_39	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-2241122_39	Pfam	PF13476	AAA domain	AAA_23
UHGV-2241122_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2241122_39	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2241122_44	Structural annotation	PF16857, MF_00273, NF001981	NA	NA
UHGV-2241122_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2241122_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2241122_45	UniRef90	UniRef90_A0A356CZA0	Oxidoreductase	NA
UHGV-2241122_45	eggNOG-mapper	1540257.JQMW01000004_gene443	Phage antirepressor protein KilAC domain	NA
UHGV-2241122_45	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2241122_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2241122_45	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2241122_45	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2241122_46	UniRef90	UniRef90_A0A356CZJ3	HTH cro/C1-type domain-containing protein	NA
UHGV-2241122_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2241122_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2241122_47	UniRef90	UniRef90_A0A1C6E8P6	Peptidase S24-like	NA
UHGV-2241122_47	eggNOG-mapper	641112.ACOK01000073_gene2861	Peptidase S24-like	NA
UHGV-2241122_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2241122_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2241122_47	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-2241122_48	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-2241122_48	PHROG	phrog_19856	NA	unknown function
UHGV-2241122_48	UniRef90	UniRef90_A0A356CZV8	Mrr_cat domain-containing protein	NA
UHGV-2241122_48	eggNOG-mapper	1384065.JAGS01000001_gene152	Restriction endonuclease	NA
UHGV-2241122_48	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2241122_48	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2241122_48	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2241122_49	KOfam	K14059	int; integrase	NA
UHGV-2241122_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2241122_49	UniRef90	UniRef90_A0A373VP80	Tyr recombinase domain-containing protein	NA
UHGV-2241122_49	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-2241122_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2241122_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2241122_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2241122_50	eggNOG-mapper	1160721.RBI_II00514	glutamate synthase	NA
UHGV-2241122_50	COG	COG0493	NADPH-dependent glutamate synthase beta chain or related oxidoreductase	NA