vOTU-000243

Overview

No. of genomes 43

Genome length 40,843 bps

Completeness 100.00% (complete)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-000243
Number of genomes	43
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 › vSUBFAM-06930 › vGENUS-18349 › vSUBGEN-34715 › vOTU-000243
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0248746
BioSample	SAMN13509405
Genome length	40,843 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	52
CDS density	91.20%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0248746_1	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0248746_2	KOfam	K07486	K07486; transposase	NA
UHGV-0248746_2	PHROG	phrog_2199	transposase	integration and excision
UHGV-0248746_2	UniRef90	UniRef90_UPI001F21DBE8	IS110 family transposase	NA
UHGV-0248746_2	eggNOG-mapper	756499.Desde_3336	Transposase IS116 IS110 IS902	NA
UHGV-0248746_2	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0248746_2	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0248746_2	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0248746_2	COG	COG3547	Transposase	NA
UHGV-0248746_2	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0248746_4	PHROG	phrog_5143	NA	unknown function
UHGV-0248746_4	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0248746_4	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0248746_4	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0248746_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0248746_5	PHROG	phrog_15001	endolysin	lysis
UHGV-0248746_5	UniRef90	UniRef90_A0A1D8GMZ6	Amidase	NA
UHGV-0248746_5	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0248746_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0248746_5	COG	COG1388	LysM repeat	NA
UHGV-0248746_6	PHROG	phrog_443	holin	lysis
UHGV-0248746_6	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0248746_6	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0248746_6	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0248746_6	Structural annotation	PF16945	NA	NA
UHGV-0248746_7	PHROG	phrog_937	hemolysin	other
UHGV-0248746_7	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0248746_8	PHROG	phrog_27545	NA	unknown function
UHGV-0248746_8	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0248746_8	eggNOG-mapper	1179773.BN6_11350	Glycosyl hydrolase family 20, domain 2	NA
UHGV-0248746_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0248746_8	COG	COG3525	N-acetyl-beta-hexosaminidase	NA
UHGV-0248746_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0248746_10	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0248746_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0248746_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0248746_12	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0248746_12	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0248746_12	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0248746_12	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0248746_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0248746_14	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0248746_14	UniRef90	UniRef90_G4KR97	Terminase_3 domain-containing protein	NA
UHGV-0248746_14	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0248746_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0248746_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0248746_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0248746_20	PHROG	phrog_30542	NA	unknown function
UHGV-0248746_20	eggNOG-mapper	521098.Aaci_1077	NA	NA
UHGV-0248746_20	PADLOC	icity0043	NA	CRISPR-CAS
UHGV-0248746_21	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0248746_21	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0248746_21	UniRef90	UniRef90_A0A2V2F7A3	HTH cro/C1-type domain-containing protein	NA
UHGV-0248746_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0248746_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0248746_23	KOfam	K14059	int; integrase	NA
UHGV-0248746_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0248746_23	UniRef90	UniRef90_UPI00067F0A02	tyrosine-type recombinase/integrase	NA
UHGV-0248746_23	eggNOG-mapper	552396.HMPREF0863_00330	Belongs to the 'phage' integrase family	NA
UHGV-0248746_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0248746_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0248746_23	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0248746_26	KOfam	K03550	ruvA; holliday junction DNA helicase RuvA [EC:5.6.2.4]	NA
UHGV-0248746_26	UniRef90	UniRef90_R6GW79	Holliday junction ATP-dependent DNA helicase RuvA	NA
UHGV-0248746_26	eggNOG-mapper	1226322.HMPREF1545_03657	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	NA
UHGV-0248746_26	Pfam	PF01330	RuvA N terminal domain	RuvA_N
UHGV-0248746_26	Pfam	PF14520	Helix-hairpin-helix domain	HHH_5
UHGV-0248746_26	Pfam	PF07499	RuvA, C-terminal domain	RuvA_C
UHGV-0248746_26	NCBIFam	TIGR00084.2	Holliday junction branch migration protein RuvA	NA
UHGV-0248746_26	COG	COG0632	Holliday junction resolvasome RuvABC DNA-binding subunit	NA
UHGV-0248746_26	HAMAP	MF_00031	Holliday junction branch migration complex subunit RuvA [ruvA]	NA
UHGV-0248746_27	KOfam	K03551	ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]	NA
UHGV-0248746_27	PHROG	phrog_168	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0248746_27	UniRef90	UniRef90_R6H745	Holliday junction ATP-dependent DNA helicase RuvB	NA
UHGV-0248746_27	eggNOG-mapper	1297617.JPJD01000009_gene2943	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing	NA
UHGV-0248746_27	Pfam	PF05496	Holliday junction DNA helicase RuvB P-loop domain	RuvB_N
UHGV-0248746_27	Pfam	PF17864	RuvB AAA lid domain	AAA_lid_4
UHGV-0248746_27	Pfam	PF05491	RuvB C-terminal winged helix domain	RuvB_C
UHGV-0248746_27	NCBIFam	NF000868.0	Holliday junction branch migration DNA helicase RuvB	NA
UHGV-0248746_27	COG	COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	NA
UHGV-0248746_27	HAMAP	MF_00016	Holliday junction branch migration complex subunit RuvB [ruvB]	NA
UHGV-0248746_27	Structural annotation	PF05496, PF05491, PF17864, MF_00016, NF000868, COG2255	NA	NA
UHGV-0248746_28	eggNOG-mapper	1160721.RBI_I00318	Probable zinc-ribbon domain	NA
UHGV-0248746_28	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0248746_28	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0248746_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0248746_29	PHROG	phrog_6058	NA	unknown function
UHGV-0248746_29	UniRef90	UniRef90_A0A2V2F1E5	HTH cro/C1-type domain-containing protein	NA
UHGV-0248746_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0248746_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0248746_30	UniRef90	UniRef90_UPI000C7663AC	XRE family transcriptional regulator	NA
UHGV-0248746_30	eggNOG-mapper	1007096.BAGW01000023_gene157	NA	NA
UHGV-0248746_35	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0248746_35	UniRef90	UniRef90_UPI00137AAD00	ATP-binding protein	NA
UHGV-0248746_35	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0248746_35	Pfam	PF13479	AAA domain	AAA_24
UHGV-0248746_35	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0248746_35	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0248746_36	UniRef90	UniRef90_A0A7X5DCB3	PDDEXK_1 domain-containing protein	NA
UHGV-0248746_36	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0248746_36	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0248746_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0248746_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0248746_37	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0248746_37	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-0248746_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0248746_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0248746_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0248746_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0248746_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0248746_38	PHROG	phrog_36563	NA	unknown function
UHGV-0248746_38	eggNOG-mapper	445972.ANACOL_00157	ftsk spoiiie	NA
UHGV-0248746_38	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0248746_39	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0248746_39	UniRef90	UniRef90_A0A509ENP9	Replication initiation protein	NA
UHGV-0248746_39	eggNOG-mapper	411483.FAEPRAA2165_01877	HNH endonuclease	NA
UHGV-0248746_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0248746_39	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0248746_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0248746_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0248746_40	UniRef90	UniRef90_A0A4Z0Y679	DNA replication protein DnaC	NA
UHGV-0248746_40	eggNOG-mapper	411473.RUMCAL_01914	NA	NA
UHGV-0248746_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0248746_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0248746_40	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0248746_41	PHROG	phrog_874	NA	unknown function
UHGV-0248746_41	UniRef90	UniRef90_A0A2Z4Q9Z0	PmgT	NA
UHGV-0248746_41	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0248746_41	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0248746_42	PHROG	phrog_23660	NA	unknown function
UHGV-0248746_42	eggNOG-mapper	1235790.C805_00028	NA	NA
UHGV-0248746_46	PHROG	phrog_2045	NA	unknown function
UHGV-0248746_46	UniRef90	UniRef90_UPI001379B50A	NA	NA
UHGV-0248746_46	eggNOG-mapper	1226322.HMPREF1545_03526	NA	NA
UHGV-0248746_46	Pfam	PF07505	NA	DUF5131
UHGV-0248746_46	COG	COG4422	NA	NA
UHGV-0248746_46	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0248746_47	PHROG	phrog_1374	NA	unknown function
UHGV-0248746_47	UniRef90	UniRef90_A0A8F5MGK2	Membrane protein	NA
UHGV-0248746_47	eggNOG-mapper	479433.Caci_3011	Transmembrane Fragile-X-F protein	NA
UHGV-0248746_47	Structural annotation	TIGR04438	NA	NA
UHGV-0248746_50	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0248746_50	Structural annotation	PF11650	NA	NA
UHGV-0248746_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0248746_51	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0248746_51	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0248746_51	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0248746_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0248746_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0248746_51	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0248746_52	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0248746_52	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0248746_52	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0248746	Yes	40,843 bps	53.64%	100.00%	0.9745
UHGV-1366630	No	40,627 bps	53.65%	100.00%	0.9762
UHGV-0247937	No	40,582 bps	53.69%	100.00%	0.9768
UHGV-1365661	No	40,294 bps	53.68%	100.00%	0.9744
UHGV-0220066	No	40,040 bps	53.38%	100.00%	0.9775
UHGV-0376892	No	40,040 bps	53.37%	100.00%	0.9745
UHGV-1361107	No	40,040 bps	53.37%	100.00%	0.9772
UHGV-1361397	No	40,040 bps	53.38%	100.00%	0.9738
UHGV-2146033	No	40,040 bps	53.37%	100.00%	0.9765
UHGV-0104726	No	40,029 bps	53.39%	100.00%	0.9767
UHGV-2104479	No	40,029 bps	53.39%	100.00%	0.9768
UHGV-1361182	No	39,748 bps	53.33%	100.00%	0.9746
UHGV-2014067	No	39,748 bps	53.33%	100.00%	0.9744
UHGV-0367693	No	39,744 bps	53.33%	100.00%	0.9767
UHGV-0095530	No	39,714 bps	53.35%	100.00%	0.9728
UHGV-1361782	No	39,714 bps	53.35%	100.00%	0.9728
UHGV-0362907	No	39,468 bps	53.35%	100.00%	0.9766
UHGV-1369024	No	39,151 bps	53.82%	100.00%	0.9773
UHGV-1368088	No	39,042 bps	53.25%	100.00%	0.9764
UHGV-0218709	No	38,215 bps	53.75%	100.00%	0.9754
UHGV-1502108	No	56,978 bps	53.36%	99.90%	0.9778
UHGV-0202399	No	40,047 bps	53.38%	98.57%	0.9764
UHGV-1430577	No	40,033 bps	53.36%	98.54%	0.9774
UHGV-0142590	No	40,006 bps	53.33%	98.47%	0.9771
UHGV-1384306	No	40,006 bps	53.33%	98.47%	0.9771
UHGV-1474288	No	39,929 bps	53.66%	98.28%	0.9700
UHGV-1380111	No	39,630 bps	53.31%	97.55%	0.9731
UHGV-1491400	No	39,133 bps	53.48%	96.32%	0.9763
UHGV-1487881	No	38,249 bps	53.26%	94.15%	0.9784
UHGV-1407106	No	37,478 bps	53.35%	92.25%	0.9771
UHGV-1442769	No	32,211 bps	53.53%	79.28%	0.9746
UHGV-1387332	No	31,508 bps	53.52%	77.55%	0.9760
UHGV-1446357	No	24,838 bps	53.04%	61.14%	0.9781
UHGV-1604285	No	18,023 bps	53.23%	44.36%	0.9801
UHGV-1568197	No	16,100 bps	54.04%	39.63%	0.9801
UHGV-1694826	No	14,400 bps	54.65%	35.44%	0.9789
UHGV-0184574	No	13,271 bps	54.58%	32.67%	0.9683
UHGV-1712282	No	13,023 bps	54.28%	32.06%	0.9669
UHGV-1653302	No	12,525 bps	52.49%	30.83%	0.9815
UHGV-1631305	No	12,233 bps	52.27%	30.11%	0.9749
UHGV-1569743	No	12,097 bps	52.26%	29.78%	0.9815
UHGV-1580128	No	11,657 bps	54.18%	28.69%	0.9692
UHGV-1546195	No	10,232 bps	54.29%	25.19%	0.9745