vOTU-000540

Overview

No. of genomes 29

Genome length 61,483 bps

Completeness 100.00% (complete)

Host UBA10281

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-000540
Number of genomes	29
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00070 › vSUBFAM-03003 › vGENUS-04057 › vSUBGEN-19583 › vOTU-000540
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Christensenellales › Borkfalkiaceae › UBA10281
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1369596
BioSample	SAMN02334102
Genome length	61,483 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	86
CDS density	89.46%
tRNA count	3
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1369596_1	PHROG	phrog_15503	NA	unknown function
UHGV-1369596_1	UniRef90	UniRef90_A0A218KCC8	Putative terminase ATPase subunit	NA
UHGV-1369596_1	eggNOG-mapper	1308863.U5J9B2_9CAUD	NA	NA
UHGV-1369596_1	Structural annotation	PF04466, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1369596_3	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1369596_3	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1369596_3	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-1369596_3	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-1369596_3	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1369596_3	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1369596_3	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1369596_4	PHROG	phrog_3136	NA	unknown function
UHGV-1369596_4	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1369596_4	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1369596_5	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1369596_5	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1369596_5	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1369596_7	Structural annotation	PF04456, MF_02244, NF001670, COG1550	NA	NA
UHGV-1369596_8	PHROG	phrog_8684	NA	unknown function
UHGV-1369596_8	UniRef90	UniRef90_A0A553KG23	YopX domain-containing protein	NA
UHGV-1369596_8	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-1369596_8	Pfam	PF09643	YopX protein	YopX
UHGV-1369596_8	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1369596_10	Structural annotation	PF10842, MF_00436, NF011232, COG1923	NA	NA
UHGV-1369596_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1369596_14	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1369596_14	UniRef90	UniRef90_A0A1Q6TZF2	Methyltransferase	NA
UHGV-1369596_14	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-1369596_14	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1369596_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1369596_14	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1369596_15	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-1369596_15	PHROG	phrog_359	DNA methyltransferase	other
UHGV-1369596_15	UniRef90	UniRef90_A0A1C0AG56	DNA methyltransferase	NA
UHGV-1369596_15	eggNOG-mapper	887325.HMPREF0381_0367	MT-A70	NA
UHGV-1369596_15	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-1369596_15	Pfam	PF05063	MT-A70	MT-A70
UHGV-1369596_15	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-1369596_15	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-1369596_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1369596_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1369596_18	UniRef90	UniRef90_UPI001C0F849C	NA	NA
UHGV-1369596_18	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-1369596_18	Pfam	PF06356	NA	DUF1064
UHGV-1369596_18	Structural annotation	PF06356	NA	NA
UHGV-1369596_20	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1369596_20	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1369596_20	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-1369596_20	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-1369596_20	Pfam	PF03837	RecT family	RecT
UHGV-1369596_20	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1369596_20	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1369596_20	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1369596_21	PHROG	phrog_674	NA	unknown function
UHGV-1369596_21	UniRef90	UniRef90_UPI000428A750	NA	NA
UHGV-1369596_21	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-1369596_21	Pfam	PF07083	NA	DUF1351
UHGV-1369596_21	Structural annotation	PF07083	NA	NA
UHGV-1369596_22	PHROG	phrog_37900	NA	unknown function
UHGV-1369596_22	UniRef90	UniRef90_UPI000A03DFD3	zinc ribbon domain-containing protein	NA
UHGV-1369596_22	eggNOG-mapper	1121866.AUGK01000014_gene2125	serine threonine protein kinase	NA
UHGV-1369596_22	Pfam	PF19789	NA	DUF6273
UHGV-1369596_22	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1369596_22	Structural annotation	PF19789	NA	NA
UHGV-1369596_23	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1369596_23	UniRef90	UniRef90_A0A6N2TWZ2	HNHc domain-containing protein	NA
UHGV-1369596_23	eggNOG-mapper	935948.KE386495_gene1350	HNH endonuclease	NA
UHGV-1369596_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1369596_23	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1369596_24	UniRef90	UniRef90_A0A7X9C3J2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1369596_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1369596_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1369596_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1369596_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1369596_26	UniRef90	UniRef90_A0A1I0BFF0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1369596_26	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-1369596_26	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-1369596_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1369596_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1369596_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1369596_26	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1369596_27	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1369596_27	UniRef90	UniRef90_A0A4P9C8Z0	Recombinase	NA
UHGV-1369596_27	eggNOG-mapper	556268.OFAG_02261	Evidence 4 Homologs of previously reported genes of	NA
UHGV-1369596_27	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1369596_27	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1369596_27	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1369596_27	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1369596_29	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1369596_29	UniRef90	UniRef90_A0A417JGJ7	Phage replication initiation protein	NA
UHGV-1369596_29	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-1369596_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1369596_29	Structural annotation	TIGR01714	NA	NA
UHGV-1369596_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1369596_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1369596_30	UniRef90	UniRef90_R7FWV6	Single-stranded DNA-binding protein	NA
UHGV-1369596_30	eggNOG-mapper	477974.Daud_2215	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1369596_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1369596_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1369596_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1369596_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1369596_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1369596_31	PHROG	phrog_7488	NA	unknown function
UHGV-1369596_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1369596_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1369596_34	UniRef90	UniRef90_A0A4Y7RAG2	HTH-type transcriptional regulator ImmR	NA
UHGV-1369596_34	eggNOG-mapper	431943.CKL_1947	sequence-specific DNA binding	NA
UHGV-1369596_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1369596_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1369596_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1369596_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1369596_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1369596_35	UniRef90	UniRef90_UPI0013FDDDEF	helix-turn-helix domain-containing protein	NA
UHGV-1369596_35	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-1369596_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1369596_35	Pfam	PF08667	BetR domain	BetR
UHGV-1369596_35	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-1369596_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1369596_38	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1369596_38	PHROG	phrog_15286	NA	unknown function
UHGV-1369596_38	UniRef90	UniRef90_A0A354UMV7	Bro-N domain-containing protein	NA
UHGV-1369596_38	eggNOG-mapper	1121889.AUDM01000003_gene2276	BRO family, N-terminal domain	NA
UHGV-1369596_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1369596_38	COG	COG3617	Prophage antirepressor	NA
UHGV-1369596_38	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-1369596_39	UniRef90	UniRef90_A0A354UMM3	HTH cro/C1-type domain-containing protein	NA
UHGV-1369596_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1369596_39	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-1369596_39	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-1369596_40	KOfam	K14059	int; integrase	NA
UHGV-1369596_40	PHROG	phrog_1	integrase	integration and excision
UHGV-1369596_40	UniRef90	UniRef90_A0A353EXX9	Tyr recombinase domain-containing protein	NA
UHGV-1369596_40	eggNOG-mapper	1304866.K413DRAFT_0804	Belongs to the 'phage' integrase family	NA
UHGV-1369596_40	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1369596_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1369596_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1369596_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1369596_45	UniRef90	UniRef90_A0A373KLH0	LPD29 domain-containing protein	NA
UHGV-1369596_45	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-1369596_45	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1369596_49	Structural annotation	TIGR00663, COG0592	NA	NA
UHGV-1369596_53	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1369596_53	PHROG	phrog_1	integrase	integration and excision
UHGV-1369596_53	UniRef90	UniRef90_G9YP38	Site-specific recombinase, phage integrase family	NA
UHGV-1369596_53	eggNOG-mapper	941770.GL622178_gene166	recombinase XerD	NA
UHGV-1369596_53	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1369596_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1369596_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1369596_53	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1369596_55	Structural annotation	PF13058, MF_00745	NA	NA
UHGV-1369596_59	PHROG	phrog_1887	tail protein	tail
UHGV-1369596_59	eggNOG-mapper	272562.CA_C1114	NA	NA
UHGV-1369596_59	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1369596_60	Structural annotation	PF19266, PF02010, MF_04116, NF032891, TIGR01633, COG3499, COG3506, COG3291	NA	NA
UHGV-1369596_61	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-1369596_61	eggNOG-mapper	1291050.JAGE01000002_gene3296	Phage-related minor tail protein	NA
UHGV-1369596_61	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1369596_61	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1369596_61	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1369596_61	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1369596_62	Structural annotation	TIGR01725	NA	NA
UHGV-1369596_63	Structural annotation	PF06488, PF02368, TIGR01603, COG5492	NA	NA
UHGV-1369596_65	PHROG	phrog_16444	NA	unknown function
UHGV-1369596_65	UniRef90	UniRef90_A0A378XWX9	Ig domain-containing protein	NA
UHGV-1369596_65	eggNOG-mapper	646529.Desaci_2033	PFAM Ig domain protein, group 2 domain protein	NA
UHGV-1369596_65	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1369596_65	COG	COG5492	NA	NA
UHGV-1369596_65	Structural annotation	PF02368, PF18957, MF_04116, NF040788, COG3291, COG5614	NA	NA
UHGV-1369596_66	PHROG	phrog_774	NA	unknown function
UHGV-1369596_66	Structural annotation	PF15188	NA	NA
UHGV-1369596_68	Structural annotation	PF09646	NA	NA
UHGV-1369596_70	Structural annotation	TIGR02215	NA	NA
UHGV-1369596_72	Structural annotation	PF03864, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1369596_74	PHROG	phrog_3313	NA	unknown function
UHGV-1369596_74	eggNOG-mapper	1151292.QEW_0632	NA	NA
UHGV-1369596_74	Structural annotation	PF09979, TIGR01543, COG3740	NA	NA
UHGV-1369596_79	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-1369596_82	PHROG	phrog_37900	NA	unknown function
UHGV-1369596_82	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1369596_82	Pfam	PF19789	NA	DUF6273
UHGV-1369596_82	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1369596_82	Structural annotation	PF19789, PF13306, PF18998	NA	NA
UHGV-1369596_83	Structural annotation	PF07738, MF_01372, NF041263	NA	NA
UHGV-1369596_84	PHROG	phrog_2739	portal protein	head and packaging
UHGV-1369596_84	Structural annotation	PF07230, MF_04135, TIGR01537, COG5511	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1369596	Yes	61,483 bps	42.32%	100.00%	0.9696
UHGV-0018874	No	61,220 bps	42.13%	100.00%	0.9717
UHGV-1382021	No	61,047 bps	42.41%	100.00%	0.9707
UHGV-0040462	No	60,904 bps	42.52%	100.00%	0.9701
UHGV-1382536	No	60,869 bps	42.46%	100.00%	0.9729
UHGV-0266202	No	60,659 bps	42.44%	100.00%	0.9707
UHGV-0347453	No	60,659 bps	42.44%	100.00%	0.9682
UHGV-0027896	No	60,622 bps	42.50%	100.00%	0.9684
UHGV-0293698	No	60,589 bps	42.66%	100.00%	0.9703
UHGV-0132283	No	61,583 bps	42.33%	99.90%	0.9660
UHGV-1404470	No	61,540 bps	42.32%	99.90%	0.9698
UHGV-0135026	No	61,508 bps	42.32%	99.90%	0.9680
UHGV-1433328	No	61,169 bps	42.30%	99.46%	0.9702
UHGV-1531534	No	60,020 bps	42.15%	97.61%	0.9716
UHGV-0329478	No	58,969 bps	42.65%	95.87%	0.9662
UHGV-1448483	No	58,728 bps	42.63%	95.51%	0.9713
UHGV-1430725	No	58,710 bps	42.64%	95.47%	0.9721
UHGV-1381018	No	58,697 bps	42.62%	95.45%	0.9724
UHGV-0229547	No	57,733 bps	42.61%	93.89%	0.9722
UHGV-1521665	No	57,257 bps	42.47%	93.08%	0.9700
UHGV-1437861	No	51,459 bps	42.24%	83.69%	0.9638
UHGV-0241260	No	48,228 bps	42.55%	78.44%	0.9699
UHGV-0359278	No	48,134 bps	42.67%	78.24%	0.9700
UHGV-0192234	No	37,486 bps	43.52%	60.95%	0.9689
UHGV-1463166	No	33,747 bps	42.97%	54.86%	0.9706
UHGV-0306064	No	26,983 bps	41.56%	43.91%	0.9596
UHGV-0312530	No	22,332 bps	41.20%	36.32%	0.9721
UHGV-1624197	No	12,382 bps	44.11%	20.13%	0.9743
UHGV-0151946	No	10,628 bps	40.84%	17.29%	0.9463