vOTU-000615

Overview

No. of genomes 34

Genome length 42,064 bps

Completeness 100.00% (complete)

Host Faecalibacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-000615
Number of genomes	34
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00013 › vGENUS-00190 › vSUBGEN-15490 › vOTU-000615
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Faecalibacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0252989
BioSample	NA
Genome length	42,064 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	66
CDS density	91.59%
tRNA count	3
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0252989_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0252989_1	PHROG	phrog_291	endolysin	lysis
UHGV-0252989_1	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0252989_1	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0252989_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0252989_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0252989_1	Structural annotation	PF01183, NF003812, COG3757	NA	NA
UHGV-0252989_3	PHROG	phrog_15303	NA	unknown function
UHGV-0252989_5	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0252989_6	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0252989_9	PHROG	phrog_3754	NA	unknown function
UHGV-0252989_9	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0252989_10	PHROG	phrog_21718	NA	unknown function
UHGV-0252989_10	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0252989_11	PHROG	phrog_22984	NA	unknown function
UHGV-0252989_12	PHROG	phrog_16490	NA	unknown function
UHGV-0252989_12	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0252989_13	PHROG	phrog_20016	NA	unknown function
UHGV-0252989_13	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0252989_13	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0252989_13	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0252989_14	Structural annotation	PF12510	NA	NA
UHGV-0252989_16	KOfam	K14059	int; integrase	NA
UHGV-0252989_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0252989_16	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0252989_16	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0252989_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0252989_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0252989_16	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0252989_17	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0252989_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0252989_17	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0252989_20	eggNOG-mapper	1280696.ATVY01000034_gene3237	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0252989_20	Pfam	PF08461	Ribonuclease R winged-helix domain	HTH_12
UHGV-0252989_21	eggNOG-mapper	641112.ACOK01000103_gene519	NA	NA
UHGV-0252989_23	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0252989_23	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0252989_24	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0252989_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0252989_24	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0252989_25	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0252989_25	UniRef90	UniRef90_B0MB86	BRO family, N-terminal domain protein	NA
UHGV-0252989_25	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0252989_25	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0252989_25	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0252989_25	COG	COG3617	Prophage antirepressor	NA
UHGV-0252989_25	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0252989_26	PHROG	phrog_4433	NA	unknown function
UHGV-0252989_26	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0252989_26	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0252989_26	Structural annotation	NF007410	NA	NA
UHGV-0252989_27	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0252989_31	Structural annotation	PF06718	NA	NA
UHGV-0252989_33	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0252989_33	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0252989_33	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0252989_33	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0252989_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0252989_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0252989_34	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0252989_34	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0252989_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0252989_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0252989_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0252989_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0252989_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0252989_35	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0252989_35	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0252989_35	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0252989_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0252989_35	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0252989_36	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0252989_37	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0252989_40	PHROG	phrog_3136	NA	unknown function
UHGV-0252989_40	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0252989_40	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0252989_40	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0252989_40	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0252989_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0252989_41	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0252989_41	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0252989_41	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0252989_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0252989_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0252989_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0252989_42	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0252989_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0252989_43	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0252989_44	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0252989_44	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0252989_44	Structural annotation	PF04218	NA	NA
UHGV-0252989_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0252989_45	PHROG	phrog_10250	NA	unknown function
UHGV-0252989_45	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0252989_45	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0252989_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0252989_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0252989_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0252989_45	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0252989_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0252989_46	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0252989_46	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0252989_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0252989_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0252989_47	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0252989_47	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0252989_47	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0252989_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0252989_47	COG	COG2369	NA	NA
UHGV-0252989_47	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0252989_49	PHROG	phrog_8680	NA	unknown function
UHGV-0252989_49	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0252989_49	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0252989_49	Pfam	PF14386	NA	DUF4417
UHGV-0252989_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0252989_49	Structural annotation	PF14386	NA	NA
UHGV-0252989_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0252989_51	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0252989_51	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0252989_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0252989_51	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0252989_52	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0252989_52	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0252989_52	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0252989_53	Structural annotation	PF06810	NA	NA
UHGV-0252989_54	PHROG	phrog_544	major head protein	head and packaging
UHGV-0252989_54	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0252989_54	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0252989_54	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0252989_56	PHROG	phrog_17977	NA	unknown function
UHGV-0252989_56	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0252989_56	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0252989_57	Structural annotation	PF13554	NA	NA
UHGV-0252989_58	PHROG	phrog_885	major tail protein	tail
UHGV-0252989_58	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0252989_58	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0252989_61	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0252989_61	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0252989_61	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0252989_61	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0252989_61	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0252989_61	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0252989_61	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0252989_62	PHROG	phrog_3558	tail protein	tail
UHGV-0252989_62	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0252989_62	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0252989_62	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0252989_62	COG	COG4926	Phage-related protein	NA
UHGV-0252989_62	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0252989_63	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0252989_63	COG	COG4722	Phage-related protein YomH	NA
UHGV-0252989_63	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0252989_64	PHROG	phrog_5302	tail protein	tail
UHGV-0252989_64	UniRef90	UniRef90_UPI001CBAF2B2	carboxypeptidase-like regulatory domain-containing protein	NA
UHGV-0252989_64	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0252989_64	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0252989_64	Structural annotation	PF12985	NA	NA
UHGV-0252989_65	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0252989_65	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0252989_65	UniRef90	UniRef90_UPI001A9A823D	RNA-directed DNA polymerase	NA
UHGV-0252989_65	eggNOG-mapper	1203606.HMPREF1526_00259	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-0252989_65	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0252989_65	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0252989_65	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0252989_65	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0252989_66	UniRef90	UniRef90_UPI001D07AB37	XkdX family protein	NA
UHGV-0252989_66	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0252989	Yes	42,064 bps	55.95%	100.00%	0.9799
UHGV-0108144	No	41,665 bps	55.44%	100.00%	0.9813
UHGV-1356815	No	41,454 bps	55.58%	100.00%	0.9806
UHGV-1357172	No	41,454 bps	55.59%	100.00%	0.9812
UHGV-1357173	No	41,454 bps	55.58%	100.00%	0.9812
UHGV-0110250	No	41,367 bps	55.33%	100.00%	0.9813
UHGV-0242963	No	41,172 bps	55.47%	100.00%	0.9820
UHGV-0101436	No	40,786 bps	55.46%	100.00%	0.9814
UHGV-1369589	No	40,786 bps	55.46%	100.00%	0.9814
UHGV-0247303	No	40,381 bps	55.36%	100.00%	0.9809
UHGV-0105866	No	48,202 bps	56.47%	99.90%	0.9786
UHGV-1388078	No	42,139 bps	55.46%	99.90%	0.9809
UHGV-1474653	No	41,509 bps	55.60%	98.83%	0.9810
UHGV-0130258	No	41,612 bps	55.55%	98.80%	0.9810
UHGV-0113524	No	41,100 bps	56.04%	97.70%	0.9791
UHGV-2015367	No	38,666 bps	57.04%	92.08%	0.9795
UHGV-0161498	No	36,019 bps	56.32%	85.50%	0.9793
UHGV-1459945	No	35,482 bps	56.75%	84.42%	0.9824
UHGV-1506286	No	35,283 bps	56.49%	84.02%	0.9821
UHGV-0117046	No	34,667 bps	56.70%	82.57%	0.9818
UHGV-1433981	No	30,995 bps	56.90%	73.47%	0.9818
UHGV-1439517	No	28,925 bps	56.99%	68.70%	0.9820
UHGV-2083610	No	28,096 bps	55.75%	66.82%	0.9800
UHGV-1408281	No	27,524 bps	56.98%	65.66%	0.9801
UHGV-2141622	No	27,240 bps	56.46%	64.98%	0.9819
UHGV-1488743	No	26,324 bps	57.15%	62.90%	0.9811
UHGV-1778415	No	20,674 bps	55.31%	49.26%	0.9814
UHGV-1690993	No	17,339 bps	56.81%	41.07%	0.9812
UHGV-2127889	No	15,148 bps	53.75%	35.91%	0.9740
UHGV-0171761	No	14,508 bps	59.43%	34.34%	0.9698
UHGV-2024693	No	13,523 bps	55.16%	32.09%	0.9807
UHGV-1725196	No	13,205 bps	52.78%	31.27%	0.9812
UHGV-1626185	No	12,349 bps	54.85%	29.24%	0.9830
UHGV-1593873	No	11,550 bps	59.34%	27.54%	0.9822