vOTU-000652

Overview

vOTU representative UHGV-2012089

No. of genomes 17

Genome length 52,314 bps

Completeness 100.00% (complete)

Host Mediterraneibacter faecis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-000652
Number of genomes	17
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 › vSUBFAM-00190 › vGENUS-00528 › vSUBGEN-45817 › vOTU-000652
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Mediterraneibacter › Mediterraneibacter faecis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2012089
BioSample	NA
Genome length	52,314 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	82
CDS density	90.41%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2012089_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2012089_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2012089_6	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-2012089_6	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-2012089_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2012089_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2012089_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2012089_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-2012089_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2012089_8	PHROG	phrog_19695	NA	unknown function
UHGV-2012089_8	eggNOG-mapper	478749.BRYFOR_08558	NA	NA
UHGV-2012089_8	Structural annotation	PF19714	NA	NA
UHGV-2012089_9	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2012089_9	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-2012089_9	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2012089_10	PHROG	phrog_11541	NA	unknown function
UHGV-2012089_10	eggNOG-mapper	1410631.JHWZ01000005_gene204	GDSL-like Lipase/Acylhydrolase	NA
UHGV-2012089_10	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2012089_10	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2012089_11	PHROG	phrog_1009	NA	unknown function
UHGV-2012089_12	PHROG	phrog_443	holin	lysis
UHGV-2012089_12	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-2012089_12	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-2012089_12	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2012089_12	Structural annotation	PF16945	NA	NA
UHGV-2012089_13	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2012089_13	PHROG	phrog_3393	endolysin	lysis
UHGV-2012089_13	UniRef90	UniRef90_A0A3E4LXG7	NlpC/P60 domain-containing protein	NA
UHGV-2012089_13	eggNOG-mapper	665950.HMPREF1025_02511	Ami_2	NA
UHGV-2012089_13	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2012089_13	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2012089_13	Structural annotation	PF05382, NF033743, COG5492, COG0791	NA	NA
UHGV-2012089_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-2012089_14	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-2012089_14	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2012089_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2012089_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2012089_15	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-2012089_15	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-2012089_15	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-2012089_17	PHROG	phrog_1315	NA	unknown function
UHGV-2012089_17	Structural annotation	TIGR00310	NA	NA
UHGV-2012089_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2012089_18	eggNOG-mapper	1231057.AMGD01000018_gene3620	NA	NA
UHGV-2012089_18	Structural annotation	MF_02110	NA	NA
UHGV-2012089_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-2012089_19	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-2012089_19	Structural annotation	PF02924	NA	NA
UHGV-2012089_20	PHROG	phrog_29	major head protein	head and packaging
UHGV-2012089_20	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-2012089_20	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-2012089_20	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2012089_20	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-2012089_21	Structural annotation	PF07498	NA	NA
UHGV-2012089_22	PHROG	phrog_4020	NA	unknown function
UHGV-2012089_22	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-2012089_23	PHROG	phrog_8435	NA	unknown function
UHGV-2012089_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2012089_24	UniRef90	UniRef90_A0A0C1UI84	Bacteriophage HK97-gp10, tail-component family protein	NA
UHGV-2012089_24	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-2012089_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2012089_24	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2012089_25	PHROG	phrog_7585	NA	unknown function
UHGV-2012089_25	eggNOG-mapper	1443122.Z958_05865	NA	NA
UHGV-2012089_25	Structural annotation	PF05657, COG5003	NA	NA
UHGV-2012089_26	PHROG	phrog_6686	tail tube protein	tail
UHGV-2012089_26	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-2012089_26	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-2012089_26	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2012089_27	PHROG	phrog_6280	NA	unknown function
UHGV-2012089_27	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-2012089_27	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-2012089_28	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2012089_28	UniRef90	UniRef90_A0A351TJS6	Phage tail tape measure protein	NA
UHGV-2012089_28	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-2012089_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2012089_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2012089_28	COG	COG5283	Phage-related tail protein	NA
UHGV-2012089_28	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2012089_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2012089_29	UniRef90	UniRef90_A0A6L3VAU7	Phage tail family protein	NA
UHGV-2012089_29	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-2012089_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-2012089_29	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2012089_30	PHROG	phrog_538	minor tail protein	tail
UHGV-2012089_30	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-2012089_30	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-2012089_30	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2012089_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2012089_31	PHROG	phrog_1220	head protein	head and packaging
UHGV-2012089_31	UniRef90	UniRef90_UPI0015709B75	structural protein	NA
UHGV-2012089_31	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-2012089_31	Structural annotation	PF20747	NA	NA
UHGV-2012089_32	UniRef90	UniRef90_UPI001A9FB2DF	InlB B-repeat-containing protein	NA
UHGV-2012089_32	eggNOG-mapper	78346.BRUM_1821	hydrolase, family 25	NA
UHGV-2012089_32	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-2012089_32	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-2012089_32	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-2012089_32	Structural annotation	PF09479, PF00703, NF033188	NA	NA
UHGV-2012089_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2012089_35	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-2012089_36	PHROG	phrog_21718	NA	unknown function
UHGV-2012089_38	PHROG	phrog_16490	NA	unknown function
UHGV-2012089_38	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2012089_39	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-2012089_40	Structural annotation	PF00210, NF007638, COG1528	NA	NA
UHGV-2012089_43	Structural annotation	PF01649	NA	NA
UHGV-2012089_45	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-2012089_47	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2012089_47	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2012089_47	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-2012089_47	eggNOG-mapper	649638.Trad_0624	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-2012089_47	PADLOC	drt-UG29	DRT	DRT
UHGV-2012089_47	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2012089_47	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2012089_47	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2012089_47	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-2012089_49	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2012089_49	Structural annotation	PF08804	NA	NA
UHGV-2012089_50	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2012089_50	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2012089_50	eggNOG-mapper	1318617.MGM1_1480	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2012089_50	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2012089_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2012089_50	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-2012089_51	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-2012089_51	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2012089_51	UniRef90	UniRef90_A0A355TT49	DNA-directed DNA polymerase (Fragment)	NA
UHGV-2012089_51	eggNOG-mapper	1443122.Z958_03285	DNA polymerase	NA
UHGV-2012089_51	Pfam	PF02811	PHP domain	PHP
UHGV-2012089_51	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-2012089_51	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-2012089_51	Structural annotation	PF02811, PF07733, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-2012089_52	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2012089_52	UniRef90	UniRef90_C5WGV2	Putative endodeoxyribonuclease	NA
UHGV-2012089_52	eggNOG-mapper	1589270.A0A0B5A545_9CAUD	HNH endonuclease	NA
UHGV-2012089_52	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2012089_52	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2012089_52	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-2012089_53	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-2012089_53	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2012089_53	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-2012089_53	eggNOG-mapper	224324.aq_1008	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-2012089_53	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-2012089_53	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-2012089_53	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-2012089_53	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-2012089_55	PHROG	phrog_236	nucleotide kinase	other
UHGV-2012089_55	UniRef90	UniRef90_UPI0009E76E88	NA	NA
UHGV-2012089_55	eggNOG-mapper	889876.E2GLY2_9CAUD	NA	NA
UHGV-2012089_55	Pfam	PF11753	NA	DUF3310
UHGV-2012089_56	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-2012089_56	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-2012089_56	UniRef90	UniRef90_UPI001BCFCE00	recombinase RecA	NA
UHGV-2012089_56	eggNOG-mapper	1172190.M947_08195	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-2012089_56	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-2012089_56	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2012089_56	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-2012089_57	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-2012089_57	UniRef90	UniRef90_A0A5D3IBF8	PDDEXK_1 domain-containing protein	NA
UHGV-2012089_57	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-2012089_57	Pfam	PF10073	GapR-like, DNA-binding domain	GapR_DNA-bd
UHGV-2012089_57	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-2012089_57	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-2012089_59	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2012089_59	PHROG	phrog_5696	NA	unknown function
UHGV-2012089_59	UniRef90	UniRef90_A0A6N9P8V9	SAM-dependent DNA methyltransferase	NA
UHGV-2012089_59	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-2012089_59	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-2012089_59	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2012089_59	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2012089_59	Structural annotation	COG0286	NA	NA
UHGV-2012089_60	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2012089_60	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-2012089_60	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2012089_63	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-2012089_63	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-2012089_63	eggNOG-mapper	490103.B0FIM4_BPE32	DNA ligase (NAD+) activity	NA
UHGV-2012089_69	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2012089_69	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2012089_70	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-2012089_73	Structural annotation	PF10922	NA	NA
UHGV-2012089_74	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2012089_74	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2012089_74	UniRef90	UniRef90_R6NL32	Ribonuclease H	NA
UHGV-2012089_74	eggNOG-mapper	608506.COB47_1217	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2012089_74	Pfam	PF00075	RNase H	RNase_H
UHGV-2012089_74	COG	COG0328	Ribonuclease HI	NA
UHGV-2012089_74	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2012089_75	Structural annotation	PF14084	NA	NA
UHGV-2012089_78	PHROG	phrog_2412	NA	unknown function
UHGV-2012089_78	UniRef90	UniRef90_A0A6Z7A1E4	Stress-induced protein	NA
UHGV-2012089_79	Structural annotation	PF16857, NF010188, COG2157	NA	NA
UHGV-2012089_80	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2012089_81	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2012089_81	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2012089_81	UniRef90	UniRef90_UPI000FD68CF7	ParB N-terminal domain-containing protein	NA
UHGV-2012089_81	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-2012089_81	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2012089_81	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2012089_81	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-2012089_82	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-2012089_82	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-2012089_82	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-2012089_82	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-2012089_82	Structural annotation	PF20691, NF041865, COG1216	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2012089	Yes	52,314 bps	32.88%	100.00%	0.9795
UHGV-0082547	No	52,314 bps	32.88%	100.00%	0.9799
UHGV-0181332	No	52,314 bps	32.88%	100.00%	0.9797
UHGV-1355620	No	52,314 bps	32.88%	100.00%	0.9793
UHGV-0101839	No	50,006 bps	32.71%	100.00%	0.9810
UHGV-0242034	No	50,006 bps	32.71%	100.00%	0.9803
UHGV-1370445	No	50,006 bps	32.71%	100.00%	0.9810
UHGV-0283827	No	49,213 bps	33.06%	100.00%	0.9801
UHGV-0108106	No	47,960 bps	33.03%	100.00%	0.9809
UHGV-0389128	No	50,124 bps	32.88%	98.34%	0.9800
UHGV-1785765	No	21,054 bps	34.32%	41.53%	0.9814
UHGV-1725540	No	14,730 bps	32.67%	28.67%	0.9787
UHGV-1811798	No	13,542 bps	34.57%	26.93%	0.9819
UHGV-0124774	No	13,100 bps	32.01%	25.95%	0.9783
UHGV-1621465	No	12,209 bps	32.44%	24.06%	0.9792
UHGV-1706508	No	10,701 bps	35.21%	21.22%	0.9812
UHGV-1759257	No	10,669 bps	32.42%	21.14%	0.9767