vOTU-001068

Overview

No. of genomes 47

Genome length 41,923 bps

Completeness 100.00% (complete)

Host Bacteroidota

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001068
Number of genomes	47
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00079 › vGENUS-00402 › vSUBGEN-23988 › vOTU-001068
Host taxonomy	Bacteria › Bacteroidota
Host range breadth	Phylum
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1354732
BioSample	SAMEA2784483
Genome length	41,923 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	73
CDS density	92.10%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1354732_1	KOfam	K07273	acm; lysozyme	NA
UHGV-1354732_1	PHROG	phrog_291	endolysin	lysis
UHGV-1354732_1	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-1354732_1	eggNOG-mapper	1408322.JHYK01000015_gene1912	Glycosyl hydrolase, family 25	NA
UHGV-1354732_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1354732_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1354732_2	eggNOG-mapper	97138.C820_00591	NA	NA
UHGV-1354732_3	PHROG	phrog_13256	NA	unknown function
UHGV-1354732_3	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-1354732_4	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-1354732_4	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1354732_4	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1354732_5	PHROG	phrog_3754	NA	unknown function
UHGV-1354732_5	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1354732_6	PHROG	phrog_21718	NA	unknown function
UHGV-1354732_6	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1354732_7	PHROG	phrog_22984	NA	unknown function
UHGV-1354732_8	PHROG	phrog_16490	NA	unknown function
UHGV-1354732_8	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1354732_9	PHROG	phrog_20016	NA	unknown function
UHGV-1354732_9	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1354732_9	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1354732_10	Structural annotation	PF12510	NA	NA
UHGV-1354732_11	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1354732_13	KOfam	K14059	int; integrase	NA
UHGV-1354732_13	PHROG	phrog_1	integrase	integration and excision
UHGV-1354732_13	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-1354732_13	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-1354732_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1354732_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1354732_13	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1354732_14	Structural annotation	PF12688	NA	NA
UHGV-1354732_18	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1354732_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1354732_19	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-1354732_19	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-1354732_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1354732_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1354732_19	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1354732_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1354732_21	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1354732_21	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-1354732_21	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-1354732_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1354732_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1354732_21	COG	COG3617	Prophage antirepressor	NA
UHGV-1354732_21	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-1354732_23	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-1354732_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1354732_23	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1354732_25	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-1354732_25	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1354732_27	PHROG	phrog_7964	NA	unknown function
UHGV-1354732_27	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1354732_27	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-1354732_27	Pfam	PF20812	Bacteriophage PM2, Viral membrane protein P3	PM2_P3
UHGV-1354732_27	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1354732_27	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1354732_27	Structural annotation	MF_00387, NF040481, COG1043	NA	NA
UHGV-1354732_30	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-1354732_31	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1354732_31	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1354732_31	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1354732_31	Structural annotation	PF05772	NA	NA
UHGV-1354732_32	PHROG	phrog_7566	NA	unknown function
UHGV-1354732_32	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-1354732_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1354732_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1354732_33	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-1354732_33	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-1354732_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1354732_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1354732_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1354732_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1354732_33	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1354732_34	PHROG	phrog_4973	NA	unknown function
UHGV-1354732_34	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-1354732_34	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-1354732_34	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1354732_34	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-1354732_35	PHROG	phrog_16304	NA	unknown function
UHGV-1354732_35	Pfam	PF19808	NA	DUF6291
UHGV-1354732_35	Structural annotation	PF19808	NA	NA
UHGV-1354732_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1354732_38	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1354732_38	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1354732_38	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1354732_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1354732_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1354732_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1354732_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1354732_39	Structural annotation	PF01381, PF08667, MF_00535, NF041951, NF007408, COG1476, COG3655	NA	NA
UHGV-1354732_45	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1354732_45	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-1354732_45	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-1354732_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1354732_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1354732_45	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1354732_47	UniRef90	UniRef90_UPI001C00E342	NA	NA
UHGV-1354732_47	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1354732_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1354732_48	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-1354732_48	Pfam	PF07374	NA	DUF1492
UHGV-1354732_48	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1354732_48	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-1354732_49	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1354732_49	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1354732_49	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-1354732_49	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1354732_49	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1354732_49	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1354732_49	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1354732_49	COG	COG0863	DNA modification methylase	NA
UHGV-1354732_49	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1354732_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1354732_51	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1354732_51	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-1354732_51	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-1354732_51	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1354732_51	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1354732_51	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1354732_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-1354732_51	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1354732_52	PHROG	phrog_64	portal protein	head and packaging
UHGV-1354732_52	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1354732_52	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1354732_52	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1354732_52	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1354732_53	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1354732_53	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-1354732_53	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1354732_53	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1354732_53	COG	COG2369	NA	NA
UHGV-1354732_53	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1354732_54	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1354732_54	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-1354732_54	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1354732_54	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1354732_54	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1354732_54	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1354732_55	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1354732_55	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1354732_55	eggNOG-mapper	320843.Q4ZBR6_9CAUD	Phage minor structural protein GP20	NA
UHGV-1354732_55	Structural annotation	PF06810	NA	NA
UHGV-1354732_56	PHROG	phrog_544	major head protein	head and packaging
UHGV-1354732_56	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-1354732_56	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-1354732_56	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1354732_56	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1354732_58	PHROG	phrog_17977	NA	unknown function
UHGV-1354732_58	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-1354732_58	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1354732_59	Structural annotation	PF11367	NA	NA
UHGV-1354732_60	PHROG	phrog_885	major tail protein	tail
UHGV-1354732_60	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1354732_60	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1354732_60	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1354732_61	PHROG	phrog_18646	NA	unknown function
UHGV-1354732_63	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1354732_63	UniRef90	UniRef90_A0A8A6QM79	Phage tail tape measure protein	NA
UHGV-1354732_63	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-1354732_63	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1354732_63	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1354732_63	COG	COG5283	Phage-related tail protein	NA
UHGV-1354732_63	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-1354732_64	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1354732_64	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-1354732_64	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-1354732_64	COG	COG4722	Phage-related protein YomH	NA
UHGV-1354732_64	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1354732_65	PHROG	phrog_538	minor tail protein	tail
UHGV-1354732_65	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1354732_65	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-1354732_65	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1354732_65	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1354732_66	PHROG	phrog_9534	head protein	head and packaging
UHGV-1354732_66	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-1354732_66	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-1354732_69	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1354732_69	Structural annotation	NF040910	NA	NA
UHGV-1354732_70	PHROG	phrog_17147	NA	unknown function
UHGV-1354732_70	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-1354732_73	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-1354732_73	PHROG	phrog_14988	peptidase	other
UHGV-1354732_73	UniRef90	UniRef90_A0A1Q6SXP4	Peptidase_M23 domain-containing protein	NA
UHGV-1354732_73	eggNOG-mapper	665956.HMPREF1032_02708	NA	NA
UHGV-1354732_73	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1354732_73	Structural annotation	PF01551, NF040883	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1354732	Yes	41,923 bps	50.90%	100.00%	0.9777
UHGV-1352815	No	41,550 bps	49.69%	100.00%	0.9810
UHGV-0385461	No	41,394 bps	50.59%	100.00%	0.9803
UHGV-2043545	No	41,318 bps	50.78%	100.00%	0.9797
UHGV-2091996	No	41,318 bps	50.78%	100.00%	0.9790
UHGV-0214980	No	41,138 bps	50.73%	100.00%	0.9807
UHGV-0293210	No	41,735 bps	50.42%	99.90%	0.9795
UHGV-1469794	No	41,501 bps	50.59%	99.90%	0.9811
UHGV-0041822	No	41,445 bps	50.39%	99.90%	0.9803
UHGV-1462899	No	41,445 bps	50.39%	99.90%	0.9803
UHGV-0143981	No	40,752 bps	50.68%	99.11%	0.9814
UHGV-1471054	No	40,755 bps	50.84%	99.10%	0.9802
UHGV-0421453	No	40,590 bps	50.87%	98.67%	0.9792
UHGV-0046244	No	40,373 bps	50.73%	98.19%	0.9801
UHGV-1387340	No	40,373 bps	50.73%	98.19%	0.9801
UHGV-1262253	No	34,783 bps	49.62%	84.98%	0.9813
UHGV-0083437	No	34,638 bps	51.91%	84.16%	0.9824
UHGV-2164975	No	32,205 bps	51.04%	78.71%	0.9810
UHGV-0053437	No	31,972 bps	49.65%	77.81%	0.9798
UHGV-0462160	No	27,133 bps	49.54%	66.49%	0.9796
UHGV-0079833	No	25,745 bps	50.33%	62.51%	0.9806
UHGV-1497837	No	25,641 bps	50.52%	62.49%	0.9814
UHGV-0172955	No	23,814 bps	51.43%	58.24%	0.9813
UHGV-1263761	No	21,571 bps	50.02%	52.73%	0.9820
UHGV-1243526	No	21,330 bps	50.23%	52.14%	0.9820
UHGV-0253362	No	20,960 bps	50.52%	51.23%	0.9801
UHGV-1754984	No	20,268 bps	50.24%	49.51%	0.9799
UHGV-0412624	No	19,593 bps	50.15%	47.75%	0.9816
UHGV-1858944	No	18,663 bps	52.03%	45.59%	0.9826
UHGV-0439595	No	17,677 bps	50.27%	43.26%	0.9809
UHGV-0319067	No	15,880 bps	51.06%	38.90%	0.9800
UHGV-0083519	No	15,856 bps	51.53%	38.51%	0.9743
UHGV-0111682	No	15,086 bps	50.18%	36.96%	0.9786
UHGV-1734049	No	14,775 bps	50.73%	36.08%	0.9814
UHGV-0334599	No	14,601 bps	50.76%	35.66%	0.9808
UHGV-0275700	No	14,033 bps	53.40%	34.05%	0.9813
UHGV-1722463	No	13,088 bps	50.70%	32.03%	0.9828
UHGV-1163451	No	12,869 bps	48.43%	31.58%	0.9780
UHGV-2178253	No	12,803 bps	49.86%	31.43%	0.9778
UHGV-1228282	No	12,577 bps	48.68%	30.86%	0.9778
UHGV-0457512	No	12,617 bps	53.56%	30.59%	0.9811
UHGV-0402488	No	12,450 bps	53.61%	30.19%	0.9809
UHGV-0394578	No	11,825 bps	53.68%	28.67%	0.9808
UHGV-0398470	No	11,756 bps	53.68%	28.47%	0.9818
UHGV-0406024	No	11,481 bps	50.65%	27.35%	0.9804
UHGV-0044037	No	10,167 bps	50.46%	25.00%	0.9811
UHGV-2182807	No	10,357 bps	49.94%	24.97%	0.9750