vOTU-001168

Overview

vOTU representative UHGV-0020027

No. of genomes 10

Genome length 43,917 bps

Completeness 100.00% (complete)

Host Spyradocola sp905193155

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001168
Number of genomes	10
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-02522 › vGENUS-03106 › vSUBGEN-02242 › vOTU-001168
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Christensenellales › UBA1750 › Spyradocola › Spyradocola sp905193155
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020027
BioSample	NA
Genome length	43,917 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	59
CDS density	94.24%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020027_2	KOfam	K03240	EIF2B5; translation initiation factor eIF-2B subunit epsilon	NA
UHGV-0020027_2	PHROG	phrog_20532	NA	unknown function
UHGV-0020027_2	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0020027_2	Structural annotation	MF_00387, TIGR03992, COG2171	NA	NA
UHGV-0020027_3	PHROG	phrog_25567	NA	unknown function
UHGV-0020027_3	UniRef90	UniRef90_UPI0010F86420	helix-turn-helix domain-containing protein	NA
UHGV-0020027_3	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0020027_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0020027_6	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0020027_6	UniRef90	UniRef90_A0A2V2GR60	Terminase-like family protein	NA
UHGV-0020027_6	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0020027_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0020027_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0020027_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0020027_7	PHROG	phrog_156	portal protein	head and packaging
UHGV-0020027_7	eggNOG-mapper	748224.HMPREF9436_02547	NA	NA
UHGV-0020027_7	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0020027_8	KOfam	K07584	NA	NA
UHGV-0020027_8	PHROG	phrog_4478	peptidase	other
UHGV-0020027_8	UniRef90	UniRef90_A0A377FVZ3	Predicted ribosomal protein	NA
UHGV-0020027_8	eggNOG-mapper	1484479.DI14_00480	Cysteine protease Prp	NA
UHGV-0020027_8	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0020027_8	COG	COG2868	NA	NA
UHGV-0020027_8	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0020027_9	PHROG	phrog_13908	NA	unknown function
UHGV-0020027_9	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0020027_10	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0020027_10	UniRef90	UniRef90_A0A358AS35	N4-gp56 family major capsid protein	NA
UHGV-0020027_10	eggNOG-mapper	657322.FPR_02330	NA	NA
UHGV-0020027_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0020027_10	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0020027_11	PHROG	phrog_15239	NA	unknown function
UHGV-0020027_12	PHROG	phrog_12105	NA	unknown function
UHGV-0020027_12	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0020027_13	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0020027_13	eggNOG-mapper	718252.FP2_29250	NA	NA
UHGV-0020027_13	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0020027_15	PHROG	phrog_2649	endolysin	lysis
UHGV-0020027_15	UniRef90	UniRef90_A0A358ARU4	PG_binding_1 domain-containing protein	NA
UHGV-0020027_15	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0020027_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0020027_16	PHROG	phrog_22978	NA	unknown function
UHGV-0020027_16	UniRef90	UniRef90_A0A396KH15	PBECR3 domain-containing protein	NA
UHGV-0020027_16	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0020027_16	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0020027_17	PHROG	phrog_31398	NA	unknown function
UHGV-0020027_17	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0020027_17	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0020027_18	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0020027_18	PHROG	phrog_819	tail protein	tail
UHGV-0020027_18	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0020027_18	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0020027_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0020027_22	PHROG	phrog_18593	NA	unknown function
UHGV-0020027_22	UniRef90	UniRef90_UPI00189D24DB	alpha-amylase	NA
UHGV-0020027_22	eggNOG-mapper	1226322.HMPREF1545_04028	NA	NA
UHGV-0020027_22	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0020027_22	Structural annotation	PF14600	NA	NA
UHGV-0020027_23	eggNOG-mapper	97138.C820_00236	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0020027_23	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0020027_23	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0020027_23	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0020027_24	PHROG	phrog_4105	NA	unknown function
UHGV-0020027_24	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0020027_26	PHROG	phrog_6918	holin	lysis
UHGV-0020027_26	UniRef90	UniRef90_A0A1M4Z2U8	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0020027_26	eggNOG-mapper	1203606.HMPREF1526_01929	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0020027_26	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0020027_28	PHROG	phrog_21718	NA	unknown function
UHGV-0020027_28	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0020027_29	PHROG	phrog_22984	NA	unknown function
UHGV-0020027_30	PHROG	phrog_16490	NA	unknown function
UHGV-0020027_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0020027_33	KOfam	K14059	int; integrase	NA
UHGV-0020027_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0020027_33	UniRef90	UniRef90_A0A7I8D1X3	Site-specific integrase	NA
UHGV-0020027_33	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-0020027_33	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0020027_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020027_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020027_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0020027_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0020027_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020027_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0020027_36	UniRef90	UniRef90_UPI00164CACBE	helix-turn-helix domain-containing protein	NA
UHGV-0020027_36	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0020027_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020027_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020027_37	PHROG	phrog_14556	NA	unknown function
UHGV-0020027_37	eggNOG-mapper	573413.Spirs_1961	DNA RNA non-specific endonuclease	NA
UHGV-0020027_37	COG	COG1864	DNA/RNA endonuclease G, NUC1	NA
UHGV-0020027_42	UniRef90	UniRef90_A0A1C6JB46	Helix-turn-helix	NA
UHGV-0020027_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0020027_44	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0020027_44	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0020027_44	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0020027_45	PHROG	phrog_1029	NA	unknown function
UHGV-0020027_45	eggNOG-mapper	1567010.A0A0A7S0W4_9VIRU	NA	NA
UHGV-0020027_45	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0020027_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020027_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020027_47	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020027_47	UniRef90	UniRef90_A0A7I8D1X6	YqaJ domain-containing protein	NA
UHGV-0020027_47	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0020027_47	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0020027_47	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0020027_47	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0020027_47	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0020027_48	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0020027_48	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0020027_48	UniRef90	UniRef90_A0A354AUE2	Recombinase RecT	NA
UHGV-0020027_48	eggNOG-mapper	272626.lin0085	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0020027_48	Pfam	PF03837	RecT family	RecT
UHGV-0020027_48	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0020027_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0020027_48	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0020027_49	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0020027_49	UniRef90	UniRef90_A0A1F8UZU6	DnaB_2 domain-containing protein	NA
UHGV-0020027_49	eggNOG-mapper	411483.FAEPRAA2165_01877	HNH endonuclease	NA
UHGV-0020027_49	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0020027_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0020027_49	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0020027_50	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0020027_50	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020027_50	UniRef90	UniRef90_U2Q8K8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0020027_50	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0020027_50	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0020027_50	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0020027_53	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0020027_53	UniRef90	UniRef90_UPI001C3DAE12	NA	NA
UHGV-0020027_53	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0020027_53	Pfam	PF14359	NA	DUF4406
UHGV-0020027_53	Structural annotation	PF14359, COG3613	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0020027	Yes	43,917 bps	58.41%	100.00%	0.9806
UHGV-0015272	No	43,917 bps	58.41%	100.00%	0.9806
UHGV-0015572	No	43,917 bps	58.41%	100.00%	0.9801
UHGV-0173133	No	43,538 bps	58.52%	100.00%	0.9803
UHGV-0212955	No	43,538 bps	58.52%	100.00%	0.9815
UHGV-0030450	No	44,236 bps	58.29%	99.90%	0.9798
UHGV-0190233	No	42,000 bps	57.90%	95.56%	0.9808
UHGV-0009691	No	28,225 bps	57.88%	64.21%	0.9798
UHGV-0032778	No	23,650 bps	57.67%	53.80%	0.9806
UHGV-1829172	No	12,239 bps	59.45%	27.85%	0.9823