vOTU-001205

Overview

No. of genomes 12

Genome length 35,997 bps

Completeness 100.00% (complete)

Host Clostridium P ventriculi

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001205
Number of genomes	12
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-03923 › vGENUS-06202 › vSUBGEN-29444 › vOTU-001205
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Clostridiales › Clostridiaceae › Clostridium P › Clostridium P ventriculi
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0024226
BioSample	SAMEA4766174
Genome length	35,997 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	45
CDS density	88.94%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0024226_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0024226_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0024226_1	UniRef90	UniRef90_UPI00073ED0B4	replicative DNA helicase	NA
UHGV-0024226_1	eggNOG-mapper	1499684.CCNP01000018_gene1892	DnaB-like helicase N terminal domain	NA
UHGV-0024226_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0024226_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-0024226_1	Structural annotation	PF03796, MF_04155, NF006606, COG0305	NA	NA
UHGV-0024226_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0024226_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0024226_2	UniRef90	UniRef90_UPI00073F5ED6	single-stranded DNA-binding protein	NA
UHGV-0024226_2	eggNOG-mapper	190478.Q8SBL5_9CAUD	Single-strand binding protein family	NA
UHGV-0024226_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0024226_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0024226_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0024226_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0024226_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0024226_6	UniRef90	UniRef90_UPI00073E4E5C	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0024226_6	eggNOG-mapper	293826.Amet_2405	sigma factor activity	NA
UHGV-0024226_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0024226_7	PHROG	phrog_3928	NA	unknown function
UHGV-0024226_8	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0024226_8	PHROG	phrog_216	integrase	integration and excision
UHGV-0024226_8	UniRef90	UniRef90_UPI00073F81CE	tyrosine-type recombinase/integrase	NA
UHGV-0024226_8	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-0024226_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0024226_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0024226_8	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0024226_9	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0024226_9	UniRef90	UniRef90_UPI000BBCCA26	Xaa-His dipeptidase	NA
UHGV-0024226_9	eggNOG-mapper	86416.Clopa_0334	transposase activity	NA
UHGV-0024226_9	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0024226_9	Structural annotation	PF07141	NA	NA
UHGV-0024226_10	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0024226_10	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0024226_10	UniRef90	UniRef90_UPI00073EFE21	HNH endonuclease	NA
UHGV-0024226_10	eggNOG-mapper	1211817.CCAT010000007_gene1042	HNH endonuclease	NA
UHGV-0024226_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0024226_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0024226_10	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0024226_11	PHROG	phrog_1066	NA	unknown function
UHGV-0024226_11	eggNOG-mapper	642492.Clole_1854	NA	NA
UHGV-0024226_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0024226_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0024226_12	UniRef90	UniRef90_UPI00073E9160	terminase large subunit	NA
UHGV-0024226_12	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0024226_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0024226_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0024226_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0024226_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0024226_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0024226_13	UniRef90	UniRef90_UPI00073F2563	phage portal protein	NA
UHGV-0024226_13	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0024226_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0024226_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0024226_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0024226_14	KOfam	K06904	NA	NA
UHGV-0024226_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0024226_14	UniRef90	UniRef90_UPI000B2C64A2	HK97 family phage prohead protease	NA
UHGV-0024226_14	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0024226_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0024226_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0024226_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0024226_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0024226_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0024226_15	UniRef90	UniRef90_UPI00073F8CF6	phage major capsid protein	NA
UHGV-0024226_15	eggNOG-mapper	642492.Clole_1858	phage major capsid protein, HK97 family	NA
UHGV-0024226_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0024226_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0024226_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0024226_15	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0024226_16	eggNOG-mapper	1196322.A370_05715	NA	NA
UHGV-0024226_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0024226_17	UniRef90	UniRef90_UPI00073F417F	phage head closure protein	NA
UHGV-0024226_17	eggNOG-mapper	1567011.A0A0A7RUH8_9VIRU	Phage head-tail joining protein	NA
UHGV-0024226_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0024226_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0024226_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0024226_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0024226_18	UniRef90	UniRef90_UPI000BE3165C	HK97 gp10 family phage protein	NA
UHGV-0024226_18	eggNOG-mapper	1033737.CAEV01000029_gene290	NA	NA
UHGV-0024226_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0024226_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0024226_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0024226_19	PHROG	phrog_78	tail terminator	connector
UHGV-0024226_19	UniRef90	UniRef90_UPI000AA7C45F	prohead protease	NA
UHGV-0024226_19	eggNOG-mapper	1033737.CAEV01000029_gene289	NA	NA
UHGV-0024226_20	PHROG	phrog_88	major tail protein	tail
UHGV-0024226_20	UniRef90	UniRef90_UPI00073EFF5D	phage tail protein	NA
UHGV-0024226_20	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0024226_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0024226_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0024226_21	PHROG	phrog_16952	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0024226_21	UniRef90	UniRef90_A0A7Y0EL47	RNA polymerase subunit sigma	NA
UHGV-0024226_21	eggNOG-mapper	1443122.Z958_06020	NA	NA
UHGV-0024226_22	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0024226_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0024226_22	UniRef90	UniRef90_UPI00073F8692	phage tail tape measure protein	NA
UHGV-0024226_22	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0024226_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0024226_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0024226_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0024226_22	Structural annotation	PF10145, PF16789, TIGR01760, TIGR02473, COG5280	NA	NA
UHGV-0024226_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0024226_23	UniRef90	UniRef90_UPI00073F69EF	phage tail family protein	NA
UHGV-0024226_23	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-0024226_23	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0024226_23	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0024226_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0024226_24	PHROG	phrog_5555	tail protein	tail
UHGV-0024226_24	UniRef90	UniRef90_UPI00073F9303	phage tail protein	NA
UHGV-0024226_24	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0024226_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0024226_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0024226_24	COG	COG4926	Phage-related protein	NA
UHGV-0024226_26	KOfam	K13956	IPP, KLHL27; actin-binding protein IPP	NA
UHGV-0024226_26	PHROG	phrog_12615	NA	unknown function
UHGV-0024226_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0024226_26	Pfam	PF01344	Kelch motif	Kelch_1
UHGV-0024226_26	Pfam	PF13418	Galactose oxidase, central domain	Kelch_4
UHGV-0024226_26	Pfam	PF07646	Kelch motif	Kelch_2
UHGV-0024226_26	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0024226_26	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0024226_27	PHROG	phrog_11837	NA	unknown function
UHGV-0024226_28	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0024226_28	Structural annotation	NF040910	NA	NA
UHGV-0024226_29	PHROG	phrog_199	holin	lysis
UHGV-0024226_29	UniRef90	UniRef90_UPI00073F5B1F	phage holin family protein	NA
UHGV-0024226_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0024226_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0024226_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0024226_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0024226_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0024226_30	PHROG	phrog_670	endolysin	lysis
UHGV-0024226_30	UniRef90	UniRef90_UPI0009EA7BE7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0024226_30	eggNOG-mapper	641107.CDLVIII_1361	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0024226_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0024226_30	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0024226_30	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0024226_31	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0024226_31	PHROG	phrog_7043	tail protein	tail
UHGV-0024226_31	UniRef90	UniRef90_A0A2X2YB38	DNA internalization-related competence protein ComEC/Rec2	NA
UHGV-0024226_31	eggNOG-mapper	272563.CD630_33480	competence protein COMEC	NA
UHGV-0024226_31	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0024226_31	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0024226_32	PHROG	phrog_11864	NA	unknown function
UHGV-0024226_32	eggNOG-mapper	1168065.DOK_08024	NA	NA
UHGV-0024226_33	PHROG	phrog_21883	NA	unknown function
UHGV-0024226_33	UniRef90	UniRef90_UPI0018AB7309	RICIN domain-containing protein	NA
UHGV-0024226_33	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0024226_34	eggNOG-mapper	865861.AZSU01000003_gene2202	NA	NA
UHGV-0024226_35	PHROG	phrog_18939	NA	unknown function
UHGV-0024226_36	PHROG	phrog_14312	NA	unknown function
UHGV-0024226_37	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0024226_37	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0024226_37	UniRef90	UniRef90_A0A7T0GMF4	FtsK domain-containing protein	NA
UHGV-0024226_37	eggNOG-mapper	545697.HMPREF0216_01772	FtsK/SpoIIIE family	NA
UHGV-0024226_37	PADLOC	SspH_00004	SspH	SSP
UHGV-0024226_37	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0024226_37	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0024226_39	UniRef90	UniRef90_UPI001C0A994C	HNH endonuclease	NA
UHGV-0024226_39	eggNOG-mapper	398525.KB900701_gene7662	HNH nucleases	NA
UHGV-0024226_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0024226_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0024226_41	UniRef90	UniRef90_UPI0009EC2495	helix-turn-helix transcriptional regulator	NA
UHGV-0024226_41	eggNOG-mapper	1347392.CCEZ01000062_gene683	transcriptional regulator	NA
UHGV-0024226_41	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0024226_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0024226_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0024226_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0024226_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0024226_42	UniRef90	UniRef90_UPI00073E7EFA	helix-turn-helix domain-containing protein	NA
UHGV-0024226_42	eggNOG-mapper	875454.BAEW01000002_gene507	domain protein	NA
UHGV-0024226_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0024226_42	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0024226_44	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0024226_44	UniRef90	UniRef90_UPI00073EF250	replication initiator protein A	NA
UHGV-0024226_44	eggNOG-mapper	573061.Clocel_2452	DnaD domain protein	NA
UHGV-0024226_44	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0024226_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0024226_44	Structural annotation	PF06970, NF040939, COG3355	NA	NA
UHGV-0024226_45	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0024226_45	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0024226_45	eggNOG-mapper	545697.HMPREF0216_03166	DnaB-like helicase N terminal domain	NA
UHGV-0024226_45	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0024226_45	COG	COG0305	Replicative DNA helicase	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0024226	Yes	35,997 bps	28.26%	100.00%	0.9585
UHGV-0018820	No	35,997 bps	28.26%	100.00%	0.9569
UHGV-0019262	No	35,997 bps	28.26%	100.00%	0.9527
UHGV-0021267	No	35,997 bps	28.26%	100.00%	0.9526
UHGV-0242691	No	34,630 bps	28.30%	100.00%	0.9594
UHGV-0019002	No	36,018 bps	28.27%	99.90%	0.9551
UHGV-1463645	No	34,618 bps	28.29%	99.90%	0.9599
UHGV-0391002	No	34,486 bps	28.13%	99.90%	0.9486
UHGV-0386237	No	34,077 bps	28.31%	99.90%	0.9573
UHGV-1475831	No	30,042 bps	28.95%	89.10%	0.9675
UHGV-1440381	No	29,162 bps	29.12%	86.49%	0.9697
UHGV-0034589	No	23,686 bps	29.64%	62.90%	0.9725