vOTU-001223

Overview

No. of genomes 24

Genome length 34,815 bps

Completeness 100.00% (complete)

Host Angelakisella

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001223
Number of genomes	24
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00236 › vGENUS-00162 › vSUBGEN-14052 › vOTU-001223
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Angelakisella
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0326204
BioSample	SAMN09605418
Genome length	34,815 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	61
CDS density	93.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0326204_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0326204_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0326204_1	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0326204_1	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0326204_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0326204_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0326204_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0326204_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0326204_1	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0326204_2	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0326204_2	UniRef90	UniRef90_A0A3A6EPW1	DNA cytosine methyltransferase	NA
UHGV-0326204_2	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0326204_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0326204_2	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0326204_3	PHROG	phrog_7566	NA	unknown function
UHGV-0326204_3	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0326204_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0326204_4	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0326204_4	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0326204_4	Structural annotation	PF05772	NA	NA
UHGV-0326204_5	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0326204_5	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0326204_5	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0326204_5	Pfam	PF06378	NA	DUF1071
UHGV-0326204_5	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0326204_7	PHROG	phrog_4433	NA	unknown function
UHGV-0326204_7	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0326204_7	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0326204_7	Structural annotation	NF007410	NA	NA
UHGV-0326204_10	Structural annotation	NF041588	NA	NA
UHGV-0326204_11	UniRef90	UniRef90_UPI001E431871	helix-turn-helix transcriptional regulator	NA
UHGV-0326204_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0326204_14	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0326204_14	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-0326204_16	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-0326204_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0326204_16	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0326204_16	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0326204_18	KOfam	K14059	int; integrase	NA
UHGV-0326204_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0326204_18	UniRef90	UniRef90_UPI001E298856	site-specific integrase	NA
UHGV-0326204_18	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0326204_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0326204_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0326204_18	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0326204_19	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0326204_19	PHROG	phrog_15001	endolysin	lysis
UHGV-0326204_19	UniRef90	UniRef90_A0A8D9UHF0	PGRP protein	NA
UHGV-0326204_19	eggNOG-mapper	411483.FAEPRAA2165_03397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0326204_19	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0326204_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0326204_19	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0326204_20	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-0326204_21	PHROG	phrog_37604	NA	unknown function
UHGV-0326204_21	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0326204_22	PHROG	phrog_27545	NA	unknown function
UHGV-0326204_22	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0326204_22	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0326204_22	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0326204_24	KOfam	K20285	RABEPK; Rab9 effector protein with kelch motifs	NA
UHGV-0326204_24	Pfam	PF07646	Kelch motif	Kelch_2
UHGV-0326204_24	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0326204_24	Pfam	PF13418	Galactose oxidase, central domain	Kelch_4
UHGV-0326204_24	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0326204_25	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0326204_25	Pfam	PF07646	Kelch motif	Kelch_2
UHGV-0326204_25	Pfam	PF01344	Kelch motif	Kelch_1
UHGV-0326204_25	Pfam	PF13418	Galactose oxidase, central domain	Kelch_4
UHGV-0326204_26	PHROG	phrog_5811	NA	unknown function
UHGV-0326204_26	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0326204_26	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-0326204_27	PHROG	phrog_7064	tail protein	tail
UHGV-0326204_27	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-0326204_27	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0326204_28	PHROG	phrog_20385	minor tail protein	tail
UHGV-0326204_28	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0326204_28	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0326204_28	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0326204_29	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0326204_29	UniRef90	UniRef90_A0A2V2GLB5	Phage tail tape measure protein	NA
UHGV-0326204_29	eggNOG-mapper	1033743.CAES01000020_gene3130	Phage-related minor tail protein	NA
UHGV-0326204_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0326204_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0326204_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0326204_29	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0326204_30	PHROG	phrog_709	NA	unknown function
UHGV-0326204_30	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0326204_30	Structural annotation	PF19591	NA	NA
UHGV-0326204_31	PHROG	phrog_88	major tail protein	tail
UHGV-0326204_31	UniRef90	UniRef90_A0A2V2GLL2	Phage tail protein	NA
UHGV-0326204_31	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0326204_31	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0326204_31	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0326204_32	PHROG	phrog_78	tail terminator	connector
UHGV-0326204_32	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0326204_32	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0326204_32	Structural annotation	PF20765	NA	NA
UHGV-0326204_33	UniRef90	UniRef90_UPI00073E355A	HK97 gp10 family phage protein	NA
UHGV-0326204_33	eggNOG-mapper	665956.HMPREF1032_02261	NA	NA
UHGV-0326204_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0326204_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0326204_34	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0326204_34	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0326204_34	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0326204_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0326204_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0326204_35	PHROG	phrog_2550	NA	unknown function
UHGV-0326204_35	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0326204_35	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0326204_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0326204_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0326204_36	UniRef90	UniRef90_A0A2V2GRA2	Phage major capsid protein	NA
UHGV-0326204_36	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0326204_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0326204_36	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0326204_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0326204_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0326204_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0326204_37	KOfam	K06904	NA	NA
UHGV-0326204_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0326204_37	UniRef90	UniRef90_A0A2V2GNJ3	HK97 family phage prohead protease	NA
UHGV-0326204_37	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0326204_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0326204_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0326204_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0326204_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0326204_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0326204_38	UniRef90	UniRef90_A0A2V2GQD5	Phage portal protein	NA
UHGV-0326204_38	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0326204_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0326204_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0326204_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0326204_38	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0326204_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0326204_39	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0326204_39	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0326204_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0326204_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0326204_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0326204_39	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0326204_40	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0326204_40	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0326204_40	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0326204_40	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0326204_40	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0326204_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0326204_41	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0326204_41	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0326204_41	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0326204_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0326204_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0326204_42	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0326204_42	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0326204_42	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0326204_42	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0326204_42	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0326204_42	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0326204_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0326204_44	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0326204_44	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0326204_45	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-0326204_48	PHROG	phrog_22543	NA	unknown function
UHGV-0326204_49	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0326204_49	UniRef90	UniRef90_A0A0E3GMP6	HNH homing endonuclease	NA
UHGV-0326204_49	eggNOG-mapper	1610832.A0A0E3GMP6_9CAUD	HNH endonuclease	NA
UHGV-0326204_49	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0326204_49	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0326204_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0326204_50	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0326204_50	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0326204_50	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0326204_50	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0326204_51	PHROG	phrog_3777	NA	unknown function
UHGV-0326204_51	UniRef90	UniRef90_A0A417F883	NA	NA
UHGV-0326204_51	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0326204_51	Pfam	PF12957	NA	DUF3846
UHGV-0326204_51	Structural annotation	PF12957	NA	NA
UHGV-0326204_56	Structural annotation	TIGR04381	NA	NA
UHGV-0326204_58	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0326204_58	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0326204_58	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0326204_58	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-0326204_58	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0326204_58	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0326204_59	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0326204_59	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0326204_59	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0326204_59	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0326204_59	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0326204_59	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0326204_59	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0326204_59	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0326204_60	PHROG	phrog_9804	NA	unknown function
UHGV-0326204_60	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0326204_60	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0326204_60	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0326204_60	Structural annotation	PF11417	NA	NA
UHGV-0326204_61	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0326204_61	UniRef90	UniRef90_A0A8B3R1H0	Phage replication protein	NA
UHGV-0326204_61	eggNOG-mapper	1117958.PE143B_0130490	DnaD domain protein	NA
UHGV-0326204_61	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0326204_61	Structural annotation	PF01475, NF006999, COG0735	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0326204	Yes	34,815 bps	49.83%	100.00%	0.9810
UHGV-2023832	No	33,716 bps	49.90%	100.00%	0.9808
UHGV-1359381	No	33,581 bps	49.85%	100.00%	0.9801
UHGV-1364953	No	32,543 bps	49.72%	100.00%	0.9791
UHGV-1365902	No	31,501 bps	49.47%	100.00%	0.9800
UHGV-0361823	No	31,475 bps	49.46%	100.00%	0.9802
UHGV-1323098	No	36,145 bps	50.24%	99.90%	0.9809
UHGV-0097184	No	34,317 bps	49.83%	99.90%	0.9801
UHGV-1424058	No	34,317 bps	49.83%	99.90%	0.9801
UHGV-2086950	No	34,295 bps	49.83%	99.90%	0.9816
UHGV-0129306	No	31,768 bps	49.63%	96.72%	0.9804
UHGV-1392272	No	31,518 bps	49.48%	95.95%	0.9805
UHGV-1452614	No	28,348 bps	50.45%	86.22%	0.9818
UHGV-0342163	No	26,581 bps	49.44%	80.89%	0.9761
UHGV-1402746	No	25,031 bps	48.83%	76.18%	0.9807
UHGV-1451731	No	24,729 bps	49.59%	75.21%	0.9818
UHGV-1379364	No	23,255 bps	48.30%	70.79%	0.9794
UHGV-0102124	No	22,637 bps	48.71%	68.89%	0.9803
UHGV-0180844	No	22,406 bps	49.00%	68.19%	0.9811
UHGV-1576465	No	16,295 bps	49.19%	49.59%	0.9803
UHGV-1732823	No	14,870 bps	49.87%	45.26%	0.9775
UHGV-1704592	No	14,655 bps	49.40%	44.60%	0.9753
UHGV-1773145	No	13,720 bps	50.98%	41.76%	0.9822
UHGV-1714325	No	13,050 bps	52.54%	37.74%	0.9833