vOTU-001250

Overview

No. of genomes 30

Genome length 38,898 bps

Completeness 100.00% (complete)

Host Rothia dentocariosa

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001250
Number of genomes	30
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00071 › vSUBFAM-03325 › vGENUS-16213 › vSUBGEN-28958 › vOTU-001250
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Micrococcaceae › Rothia › Rothia dentocariosa
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1367567
BioSample	SAMEA2738119
Genome length	38,898 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	55
CDS density	92.37%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1367567_1	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1367567_1	eggNOG-mapper	1145276.T479_19925	Phage-related minor tail protein	NA
UHGV-1367567_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1367567_2	PHROG	phrog_5577	minor tail protein	tail
UHGV-1367567_2	UniRef90	UniRef90_A0A5K7NJP0	Minor tail protein	NA
UHGV-1367567_2	eggNOG-mapper	1029824.AFID01000001_gene1984	Phage tail protein	NA
UHGV-1367567_2	Structural annotation	PF20753, PF05709, TIGR01633, COG4722	NA	NA
UHGV-1367567_3	UniRef90	UniRef90_A0A5K7NKW6	Minor tail protein	NA
UHGV-1367567_3	eggNOG-mapper	1203568.HMPREF1484_01973	NA	NA
UHGV-1367567_3	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-1367567_4	PHROG	phrog_1885	minor tail protein	tail
UHGV-1367567_4	UniRef90	UniRef90_A0A5K7NIT0	Minor tail protein	NA
UHGV-1367567_4	eggNOG-mapper	1064537.AGSO01000002_gene228	NA	NA
UHGV-1367567_4	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1367567_5	UniRef90	UniRef90_A0A5K7NIX2	Minor tail protein	NA
UHGV-1367567_5	Structural annotation	NF012201	NA	NA
UHGV-1367567_7	UniRef90	UniRef90_A0A7H2BGB2	Spherulation-specific family 4 protein	NA
UHGV-1367567_7	eggNOG-mapper	266117.Rxyl_2672	cellulase activity	NA
UHGV-1367567_7	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1367567_7	COG	COG1122	Energy-coupling factor transporter ATP-binding protein EcfA2	NA
UHGV-1367567_8	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-1367567_8	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1367567_8	UniRef90	UniRef90_D2NQN7	Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	NA
UHGV-1367567_8	eggNOG-mapper	794903.OPIT5_10385	Pectate lyase superfamily protein	NA
UHGV-1367567_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1367567_8	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1367567_8	COG	COG5434	Polygalacturonase	NA
UHGV-1367567_10	PHROG	phrog_404	minor tail protein	tail
UHGV-1367567_10	Pfam	PF10874	NA	DUF2746
UHGV-1367567_11	PHROG	phrog_4018	amidase	lysis
UHGV-1367567_11	UniRef90	UniRef90_A0A5K7NL11	Lysin A	NA
UHGV-1367567_11	eggNOG-mapper	1381751.JAJB01000050_gene162	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1367567_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1367567_11	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1367567_11	Structural annotation	PF01510, COG5632	NA	NA
UHGV-1367567_15	KOfam	K14059	int; integrase	NA
UHGV-1367567_15	PHROG	phrog_1	integrase	integration and excision
UHGV-1367567_15	UniRef90	UniRef90_A0A7H2BGA8	Site-specific integrase	NA
UHGV-1367567_15	eggNOG-mapper	1029824.AFID01000001_gene1993	Phage integrase family	NA
UHGV-1367567_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1367567_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1367567_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1367567_15	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1367567_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1367567_25	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1367567_29	PHROG	phrog_11324	nucleotide kinase	other
UHGV-1367567_29	Pfam	PF11753	NA	DUF3310
UHGV-1367567_33	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1367567_33	UniRef90	UniRef90_UPI001D13EBB1	phage N-6-adenine-methyltransferase	NA
UHGV-1367567_33	eggNOG-mapper	1121889.AUDM01000006_gene1517	nuclear chromosome segregation	NA
UHGV-1367567_33	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1367567_33	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1367567_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1367567_37	PHROG	phrog_26098	NA	unknown function
UHGV-1367567_37	eggNOG-mapper	1223544.GSI01S_01_02860	HNH endonuclease	NA
UHGV-1367567_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1367567_37	Structural annotation	COG1403	NA	NA
UHGV-1367567_38	UniRef90	UniRef90_A0A5K7NKF7	Nuclease	NA
UHGV-1367567_38	eggNOG-mapper	1029824.AFID01000001_gene1965	VRR_NUC	NA
UHGV-1367567_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1367567_40	PHROG	phrog_226	minor tail protein	tail
UHGV-1367567_40	UniRef90	UniRef90_A0A5J6TJA8	Terminase small subunit	NA
UHGV-1367567_40	eggNOG-mapper	1204524.K4HZK7_9CAUD	NA	NA
UHGV-1367567_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1367567_41	UniRef90	UniRef90_C0W4E7	Putative phage terminase, large subunit	NA
UHGV-1367567_41	eggNOG-mapper	525246.HMPREF0058_0741	Terminase	NA
UHGV-1367567_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1367567_41	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1367567_42	PHROG	phrog_104	portal protein	head and packaging
UHGV-1367567_42	UniRef90	UniRef90_UPI001F1708F4	phage portal protein	NA
UHGV-1367567_42	eggNOG-mapper	525246.HMPREF0058_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1367567_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1367567_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1367567_43	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1367567_43	Pfam	PF14436	Bacterial EndoU nuclease	EndoU_bacteria
UHGV-1367567_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-1367567_46	UniRef90	UniRef90_A0A4Y9F0R9	Phage major capsid protein	NA
UHGV-1367567_46	eggNOG-mapper	525246.HMPREF0058_0746	Phage capsid family	NA
UHGV-1367567_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1367567_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1367567_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1367567_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1367567_48	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1367567_48	UniRef90	UniRef90_UPI001364BA64	Gp19/Gp15/Gp42 family protein	NA
UHGV-1367567_48	eggNOG-mapper	1445613.JALM01000017_gene5878	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1367567_48	Pfam	PF09355	NA	Phage_Gp19
UHGV-1367567_48	Structural annotation	PF09355	NA	NA
UHGV-1367567_49	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1367567_50	PHROG	phrog_16886	NA	unknown function
UHGV-1367567_50	UniRef90	UniRef90_UPI001E5647BC	NA	NA
UHGV-1367567_50	eggNOG-mapper	1121363.KB902204_gene1250	NA	NA
UHGV-1367567_50	Pfam	PF17395	NA	DUF5403
UHGV-1367567_50	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1367567_51	Structural annotation	PF16807	NA	NA
UHGV-1367567_52	UniRef90	UniRef90_UPI001E4900BB	Ig-like domain-containing protein	NA
UHGV-1367567_52	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1367567_55	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1367567_55	eggNOG-mapper	525246.HMPREF0058_0754	tape measure	NA
UHGV-1367567_55	COG	COG1196	Chromosome segregation ATPase Smc	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1367567	Yes	38,898 bps	53.57%	100.00%	0.9402
UHGV-1367081	No	38,654 bps	53.69%	100.00%	0.9352
UHGV-1372292	No	37,796 bps	53.73%	100.00%	0.9410
UHGV-1373286	No	37,686 bps	53.73%	100.00%	0.9424
UHGV-1373990	No	37,414 bps	53.72%	100.00%	0.9359
UHGV-1487431	No	39,089 bps	53.56%	99.90%	0.9444
UHGV-1438368	No	38,599 bps	53.65%	99.23%	0.9327
UHGV-1440781	No	38,459 bps	53.68%	98.87%	0.9417
UHGV-1486898	No	38,375 bps	53.75%	98.66%	0.9368
UHGV-1483352	No	38,124 bps	53.87%	98.01%	0.9413
UHGV-1393306	No	38,090 bps	53.75%	97.92%	0.9445
UHGV-1400771	No	37,944 bps	53.69%	97.55%	0.9439
UHGV-1393247	No	37,818 bps	53.74%	97.22%	0.9484
UHGV-1436824	No	37,725 bps	53.73%	96.98%	0.9371
UHGV-1437937	No	37,693 bps	53.67%	96.90%	0.9296
UHGV-1439306	No	37,545 bps	53.75%	96.52%	0.9430
UHGV-1402585	No	37,394 bps	53.68%	96.13%	0.9517
UHGV-1484142	No	26,572 bps	55.23%	68.31%	0.9604
UHGV-1403927	No	25,344 bps	55.53%	65.16%	0.9577
UHGV-1382909	No	23,513 bps	55.79%	60.45%	0.9631
UHGV-1461724	No	21,535 bps	56.00%	55.24%	0.9617
UHGV-1461496	No	21,196 bps	53.47%	54.49%	0.9581
UHGV-1438086	No	20,173 bps	51.75%	51.86%	0.8452
UHGV-1608043	No	19,313 bps	56.16%	49.54%	0.9492
UHGV-1689509	No	19,009 bps	55.29%	49.31%	0.9716
UHGV-1651673	No	17,151 bps	54.11%	44.09%	0.8898
UHGV-1701432	No	14,506 bps	55.87%	37.20%	0.9344
UHGV-1612101	No	12,344 bps	55.63%	31.65%	0.9433
UHGV-1549989	No	11,322 bps	53.56%	29.38%	0.9638
UHGV-1745747	No	10,594 bps	55.37%	27.52%	0.9640