vOTU-001338

Overview

No. of genomes 17

Genome length 33,692 bps

Completeness 100.00% (complete)

Host Clostridium A leptum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001338
Number of genomes	17
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 › vSUBFAM-00265 › vGENUS-00612 › vSUBGEN-17447 › vOTU-001338
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Acutalibacteraceae › Clostridium A › Clostridium A leptum
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0270983
BioSample	SAMN07427829
Genome length	33,692 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	65
CDS density	91.02%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0270983_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0270983_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0270983_1	UniRef90	UniRef90_A7VPP2	Single-stranded DNA-binding protein	NA
UHGV-0270983_1	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-0270983_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0270983_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0270983_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0270983_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0270983_1	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0270983_2	PHROG	phrog_2113	NA	unknown function
UHGV-0270983_2	UniRef90	UniRef90_A0A3A6EZF7	HTH domain-containing protein	NA
UHGV-0270983_2	Structural annotation	PF21715	NA	NA
UHGV-0270983_3	PHROG	phrog_15768	NA	unknown function
UHGV-0270983_3	UniRef90	UniRef90_A0A1C6HII5	NA	NA
UHGV-0270983_3	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0270983_3	Pfam	PF19808	NA	DUF6291
UHGV-0270983_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0270983_4	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0270983_4	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0270983_4	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-0270983_4	eggNOG-mapper	428125.CLOLEP_01820	NA	NA
UHGV-0270983_4	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0270983_4	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0270983_4	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-0270983_5	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0270983_5	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0270983_5	UniRef90	UniRef90_A0A1C6HG31	Holliday junction resolvase	NA
UHGV-0270983_5	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0270983_5	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0270983_5	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0270983_5	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0270983_8	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0270983_8	UniRef90	UniRef90_A0A6M3L5L0	Putative methyltransferase	NA
UHGV-0270983_8	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0270983_8	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0270983_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0270983_9	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0270983_9	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0270983_9	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0270983_13	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0270983_13	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0270983_15	PHROG	phrog_924	NA	unknown function
UHGV-0270983_15	UniRef90	UniRef90_A0A412AV74	NA	NA
UHGV-0270983_15	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-0270983_15	Pfam	PF04448	NA	DUF551
UHGV-0270983_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0270983_20	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0270983_20	eggNOG-mapper	883112.HMPREF9707_01621	NA	NA
UHGV-0270983_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0270983_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0270983_20	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0270983_22	UniRef90	UniRef90_A7VTB3	Helix-turn-helix domain-containing protein	NA
UHGV-0270983_22	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0270983_22	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0270983_22	Structural annotation	PF13542	NA	NA
UHGV-0270983_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0270983_23	PHROG	phrog_29775	NA	unknown function
UHGV-0270983_23	UniRef90	UniRef90_A7VTB2	Phage terminase, large subunit, PBSX family	NA
UHGV-0270983_23	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0270983_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0270983_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0270983_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0270983_23	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0270983_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0270983_24	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-0270983_24	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0270983_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0270983_24	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0270983_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0270983_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0270983_25	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0270983_25	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0270983_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0270983_25	COG	COG2369	NA	NA
UHGV-0270983_25	Structural annotation	PF06152	NA	NA
UHGV-0270983_26	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0270983_26	eggNOG-mapper	1064535.MELS_1696	NA	NA
UHGV-0270983_26	Structural annotation	PF20111	NA	NA
UHGV-0270983_28	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0270983_28	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0270983_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-0270983_32	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0270983_32	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0270983_32	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0270983_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0270983_33	eggNOG-mapper	40521.Q9T1B5_BPA18	NA	NA
UHGV-0270983_34	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0270983_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0270983_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0270983_35	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-0270983_35	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0270983_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0270983_36	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0270983_36	Structural annotation	PF12691	NA	NA
UHGV-0270983_37	PHROG	phrog_820	major tail protein	tail
UHGV-0270983_37	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0270983_37	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0270983_37	COG	COG5492	NA	NA
UHGV-0270983_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0270983_38	Structural annotation	PF10666	NA	NA
UHGV-0270983_39	PHROG	phrog_706	NA	unknown function
UHGV-0270983_39	UniRef90	UniRef90_A7VNQ0	Bacteriophage Gp15 protein	NA
UHGV-0270983_39	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0270983_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0270983_39	Structural annotation	PF06854	NA	NA
UHGV-0270983_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0270983_40	UniRef90	UniRef90_A7VT93	Phage tail tape measure protein, TP901 family	NA
UHGV-0270983_40	eggNOG-mapper	428125.CLOLEP_01785	tail tape measure protein, TP901	NA
UHGV-0270983_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0270983_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0270983_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0270983_41	eggNOG-mapper	428125.CLOLEP_01784	NA	NA
UHGV-0270983_41	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0270983_42	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0270983_42	UniRef90	UniRef90_A0A1C6GY62	Peptidase S74 domain-containing protein	NA
UHGV-0270983_42	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0270983_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0270983_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0270983_43	PHROG	phrog_3088	amidase	lysis
UHGV-0270983_43	UniRef90	UniRef90_A0A412AXM4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0270983_43	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0270983_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0270983_43	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0270983_43	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0270983_44	PHROG	phrog_1863	NA	unknown function
UHGV-0270983_44	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0270983_44	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0270983_45	PHROG	phrog_297	holin	lysis
UHGV-0270983_45	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0270983_45	eggNOG-mapper	428125.CLOLEP_01780	COG COG5546 Small integral membrane protein	NA
UHGV-0270983_45	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0270983_45	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0270983_45	COG	COG5546	NA	NA
UHGV-0270983_45	Structural annotation	COG5546	NA	NA
UHGV-0270983_48	PHROG	phrog_13890	NA	unknown function
UHGV-0270983_48	UniRef90	UniRef90_R6Q1N7	Arc domain-containing protein	NA
UHGV-0270983_48	eggNOG-mapper	1378168.N510_03076	NA	NA
UHGV-0270983_48	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-0270983_50	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0270983_50	PHROG	phrog_10292	NA	unknown function
UHGV-0270983_50	UniRef90	UniRef90_R6NCF6	TM2 domain-containing protein	NA
UHGV-0270983_50	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0270983_50	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0270983_50	Pfam	PF05154	TM2 domain	TM2
UHGV-0270983_50	COG	COG2314	NA	NA
UHGV-0270983_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0270983_51	UniRef90	UniRef90_R6P7W0	Helix-turn-helix domain-containing protein	NA
UHGV-0270983_51	eggNOG-mapper	1235797.C816_02851	Helix-turn-helix XRE-family like proteins	NA
UHGV-0270983_51	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0270983_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0270983_51	Structural annotation	PF13560, NF041951, COG1813	NA	NA
UHGV-0270983_53	AcrCatalog	cluster_160566	NA	NA
UHGV-0270983_54	UniRef90	UniRef90_R6NCF0	RHH_1 domain-containing protein	NA
UHGV-0270983_54	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0270983_54	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0270983_55	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0270983_55	PHROG	phrog_4646	transposase	integration and excision
UHGV-0270983_55	UniRef90	UniRef90_R6N1U4	Integrase catalytic domain-containing protein	NA
UHGV-0270983_55	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0270983_55	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0270983_55	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0270983_55	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0270983_55	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-0270983_56	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0270983_56	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0270983_56	UniRef90	UniRef90_A0A412AWF5	Helix-turn-helix domain-containing protein	NA
UHGV-0270983_56	eggNOG-mapper	1519439.JPJG01000077_gene919	Helix-turn-helix domain	NA
UHGV-0270983_56	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0270983_56	Structural annotation	PF04218	NA	NA
UHGV-0270983_63	PHROG	phrog_14970	NA	unknown function
UHGV-0270983_63	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0270983_63	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0270983_63	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0270983_63	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0270983_63	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0270983_64	PHROG	phrog_1389	NA	unknown function
UHGV-0270983_64	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0270983_64	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0270983_65	PHROG	phrog_7566	NA	unknown function
UHGV-0270983_65	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0270983_65	eggNOG-mapper	693746.OBV_25470	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0270983	Yes	33,692 bps	45.04%	100.00%	0.9745
UHGV-0262397	No	33,692 bps	45.04%	100.00%	0.9735
UHGV-0065659	No	33,680 bps	45.04%	100.00%	0.9736
UHGV-0389564	No	32,889 bps	44.95%	100.00%	0.9738
UHGV-0127141	No	31,576 bps	45.15%	100.00%	0.9779
UHGV-2172030	No	34,650 bps	44.49%	99.90%	0.9764
UHGV-0111980	No	33,291 bps	44.91%	99.06%	0.9752
UHGV-0108116	No	33,271 bps	44.99%	99.01%	0.9755
UHGV-0060006	No	19,084 bps	44.75%	56.86%	0.9743
UHGV-1398978	No	17,122 bps	44.29%	51.03%	0.9736
UHGV-0385272	No	16,979 bps	44.97%	50.52%	0.9774
UHGV-0483828	No	16,051 bps	45.87%	47.87%	0.9812
UHGV-0057366	No	15,486 bps	46.00%	46.19%	0.9745
UHGV-0483314	No	14,846 bps	45.84%	44.13%	0.9697
UHGV-0141001	No	12,686 bps	44.55%	37.28%	0.9793
UHGV-0062797	No	11,146 bps	44.37%	32.52%	0.9801
UHGV-1656906	No	10,108 bps	46.33%	30.12%	0.9807