vOTU-001481

Overview

No. of genomes 23

Genome length 44,138 bps

Completeness 100.00% (complete)

Host CAG-83

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001481
Number of genomes	23
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00005 › vGENUS-04061 › vSUBGEN-38688 › vOTU-001481
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-83
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0342173
BioSample	SAMN06233224
Genome length	44,138 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	71
CDS density	94.53%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0342173_1	PHROG	phrog_4433	NA	unknown function
UHGV-0342173_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0342173_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0342173_2	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0342173_4	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-0342173_4	eggNOG-mapper	742738.HMPREF9460_04041	sequence-specific DNA binding	NA
UHGV-0342173_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0342173_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0342173_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0342173_5	eggNOG-mapper	476272.RUMHYD_01731	NA	NA
UHGV-0342173_5	Structural annotation	PF13429, TIGR02552, COG0457	NA	NA
UHGV-0342173_6	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0342173_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0342173_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0342173_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0342173_10	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0342173_11	KOfam	K14059	int; integrase	NA
UHGV-0342173_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0342173_11	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0342173_11	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0342173_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0342173_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0342173_11	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0342173_13	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0342173_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0342173_15	PHROG	phrog_16490	NA	unknown function
UHGV-0342173_15	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0342173_19	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0342173_19	PHROG	phrog_435	endolysin	lysis
UHGV-0342173_19	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0342173_19	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0342173_19	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0342173_19	Pfam	PF05036	SPOR domain	SPOR
UHGV-0342173_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0342173_19	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0342173_20	PHROG	phrog_199	holin	lysis
UHGV-0342173_20	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0342173_20	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0342173_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0342173_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0342173_20	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0342173_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0342173_21	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0342173_21	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0342173_21	eggNOG-mapper	909613.UO65_2741	Tyrosine phosphatase family	NA
UHGV-0342173_21	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0342173_21	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0342173_23	PHROG	phrog_30034	NA	unknown function
UHGV-0342173_23	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0342173_23	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-0342173_23	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0342173_24	Structural annotation	PF10651, TIGR04339	NA	NA
UHGV-0342173_25	PHROG	phrog_372	tail protein	tail
UHGV-0342173_25	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0342173_25	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0342173_25	Pfam	PF05895	NA	DUF859
UHGV-0342173_25	COG	COG4675	Phage tail collar domain	NA
UHGV-0342173_25	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0342173_26	PHROG	phrog_6616	tail protein	tail
UHGV-0342173_26	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0342173_26	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0342173_26	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0342173_27	PHROG	phrog_1194	NA	unknown function
UHGV-0342173_27	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0342173_27	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0342173_27	Pfam	PF20458	NA	DUF6711
UHGV-0342173_27	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0342173_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0342173_28	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0342173_28	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0342173_28	COG	COG1511	NA	NA
UHGV-0342173_28	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0342173_29	PHROG	phrog_706	NA	unknown function
UHGV-0342173_29	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0342173_29	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0342173_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0342173_29	Structural annotation	PF06854	NA	NA
UHGV-0342173_30	PHROG	phrog_11299	NA	unknown function
UHGV-0342173_30	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0342173_30	Structural annotation	PF10666	NA	NA
UHGV-0342173_31	PHROG	phrog_3099	NA	unknown function
UHGV-0342173_31	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0342173_31	Structural annotation	TIGR02126	NA	NA
UHGV-0342173_32	PHROG	phrog_3266	tail completion	connector
UHGV-0342173_32	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0342173_32	Structural annotation	PF12691	NA	NA
UHGV-0342173_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0342173_33	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0342173_33	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0342173_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0342173_33	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0342173_34	PHROG	phrog_3366	NA	unknown function
UHGV-0342173_34	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0342173_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0342173_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0342173_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0342173_36	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0342173_36	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0342173_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0342173_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0342173_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0342173_36	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0342173_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0342173_37	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0342173_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0342173_40	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0342173_40	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0342173_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0342173_40	COG	COG2369	NA	NA
UHGV-0342173_40	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0342173_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0342173_41	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0342173_41	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0342173_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0342173_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0342173_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0342173_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0342173_42	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0342173_42	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0342173_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0342173_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0342173_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0342173_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0342173_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0342173_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0342173_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0342173_43	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0342173_43	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0342173_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0342173_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0342173_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0342173_44	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0342173_44	Structural annotation	TIGR01636	NA	NA
UHGV-0342173_48	eggNOG-mapper	1297617.JPJD01000020_gene313	NA	NA
UHGV-0342173_49	PHROG	phrog_7704	NA	unknown function
UHGV-0342173_49	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-0342173_49	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0342173_49	Pfam	PF04448	NA	DUF551
UHGV-0342173_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0342173_49	Structural annotation	NF041588	NA	NA
UHGV-0342173_50	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0342173_50	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0342173_50	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0342173_50	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0342173_50	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0342173_50	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0342173_50	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0342173_51	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0342173_51	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0342173_51	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0342173_53	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0342173_53	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0342173_53	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0342173_53	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0342173_53	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0342173_53	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0342173_53	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0342173_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0342173_54	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0342173_54	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0342173_54	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0342173_54	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0342173_54	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0342173_54	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0342173_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0342173_54	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0342173_54	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0342173_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0342173_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0342173_56	UniRef90	UniRef90_A0A2T0APF7	Endodeoxyribonuclease RusA	NA
UHGV-0342173_56	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0342173_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0342173_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0342173_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0342173_57	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0342173_57	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0342173_57	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0342173_57	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0342173_57	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0342173_57	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0342173_57	COG	COG0305	Replicative DNA helicase	NA
UHGV-0342173_57	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0342173_58	PHROG	phrog_16304	NA	unknown function
UHGV-0342173_58	UniRef90	UniRef90_UPI001D074B07	NA	NA
UHGV-0342173_58	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0342173_58	Pfam	PF19808	NA	DUF6291
UHGV-0342173_58	Structural annotation	PF19808	NA	NA
UHGV-0342173_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0342173_60	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0342173_60	UniRef90	UniRef90_UPI0002EC42B8	single-stranded DNA-binding protein	NA
UHGV-0342173_60	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0342173_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0342173_60	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0342173_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0342173_60	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0342173_60	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0342173_61	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0342173_61	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0342173_62	PHROG	phrog_7566	NA	unknown function
UHGV-0342173_62	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0342173_62	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0342173_64	PHROG	phrog_1389	NA	unknown function
UHGV-0342173_64	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0342173_64	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0342173_65	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0342173_65	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0342173_65	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0342173_65	Pfam	PF04404	ERF superfamily	ERF
UHGV-0342173_65	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0342173_71	PHROG	phrog_27197	NA	unknown function
UHGV-0342173_71	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0342173_71	COG	COG5164	Transcription elongation factor SPT5	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0342173	Yes	44,138 bps	54.62%	100.00%	0.9829
UHGV-0218564	No	44,088 bps	54.86%	100.00%	0.9829
UHGV-1376928	No	44,007 bps	54.83%	100.00%	0.9829
UHGV-0176477	No	42,580 bps	54.84%	100.00%	0.9828
UHGV-0066201	No	44,436 bps	54.99%	99.82%	0.9825
UHGV-1486459	No	44,436 bps	54.99%	99.82%	0.9825
UHGV-1457147	No	44,141 bps	54.88%	99.16%	0.9825
UHGV-0146816	No	44,038 bps	54.58%	99.12%	0.9829
UHGV-0165182	No	42,657 bps	54.76%	96.20%	0.9827
UHGV-0170033	No	42,592 bps	54.84%	96.04%	0.9825
UHGV-0298782	No	40,821 bps	54.67%	92.09%	0.9823
UHGV-0153526	No	35,321 bps	54.85%	80.12%	0.9825
UHGV-0216450	No	31,891 bps	54.21%	72.77%	0.9825
UHGV-1546558	No	31,626 bps	55.39%	72.66%	0.9831
UHGV-1550849	No	31,523 bps	55.34%	72.42%	0.9828
UHGV-1521584	No	31,418 bps	55.28%	72.18%	0.9832
UHGV-1661153	No	17,119 bps	53.94%	40.27%	0.9829
UHGV-2171176	No	16,430 bps	56.06%	36.77%	0.9826
UHGV-1569675	No	16,234 bps	56.00%	36.33%	0.9826
UHGV-1730921	No	13,337 bps	52.79%	31.31%	0.9827
UHGV-2168779	No	13,229 bps	54.73%	30.96%	0.9831
UHGV-1718497	No	13,184 bps	54.73%	30.89%	0.9830
UHGV-1782760	No	10,003 bps	57.52%	22.02%	0.9816