vOTU-001851

Overview

vOTU representative UHGV-1371941

No. of genomes 21

Genome length 18,615 bps

Completeness 100.00% (complete)

Host Bifidobacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001851
Number of genomes	21
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00015 › vSUBFAM-00065 › vGENUS-00031 › vSUBGEN-00069 › vOTU-001851
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1371941
BioSample	SAMN05827199
Genome length	18,615 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	23
CDS density	90.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1371941_4	Structural annotation	PF11680	NA	NA
UHGV-1371941_6	Structural annotation	PF17548, MF_00273	NA	NA
UHGV-1371941_7	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1371941_7	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-1371941_7	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1371941_7	Structural annotation	PF17427	NA	NA
UHGV-1371941_8	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-1371941_9	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1371941_9	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1371941_9	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-1371941_9	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1371941_9	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1371941_9	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-1371941_11	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1371941_11	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-1371941_11	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-1371941_11	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-1371941_12	PHROG	phrog_2248	tail protein	tail
UHGV-1371941_12	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-1371941_12	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-1371941_12	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1371941_12	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1371941_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1371941_13	PHROG	phrog_2038	upper collar connector	connector
UHGV-1371941_13	UniRef90	UniRef90_A0A3G3LXU8	Upper collar protein	NA
UHGV-1371941_13	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-1371941_13	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1371941_13	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1371941_14	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1371941_14	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-1371941_14	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-1371941_17	Structural annotation	PF08931	NA	NA
UHGV-1371941_18	Pfam	PF05257	CHAP domain	CHAP
UHGV-1371941_18	Structural annotation	TIGR02219	NA	NA
UHGV-1371941_19	PHROG	phrog_2150	terminase	head and packaging
UHGV-1371941_19	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-1371941_19	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1371941_19	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1371941_19	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1371941_20	PHROG	phrog_199	holin	lysis
UHGV-1371941_20	UniRef90	UniRef90_U6S4E3	Toxin secretion/phage lysis holin	NA
UHGV-1371941_20	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-1371941_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1371941_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1371941_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1371941_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1371941_21	PHROG	phrog_19265	NA	unknown function
UHGV-1371941_21	UniRef90	UniRef90_S2ZFA5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1371941_21	eggNOG-mapper	1341695.BBOMB_1025	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1371941_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1371941_21	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1371941_21	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1371941_22	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-1371941_22	eggNOG-mapper	1341695.BBOMB_1024	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1371941	Yes	18,615 bps	53.19%	100.00%	0.9814
UHGV-0150408	No	18,615 bps	53.19%	100.00%	0.9814
UHGV-1371936	No	18,615 bps	53.19%	100.00%	0.9814
UHGV-1375461	No	18,562 bps	52.89%	100.00%	0.9811
UHGV-1371249	No	18,560 bps	52.88%	100.00%	0.9817
UHGV-1375458	No	18,560 bps	52.88%	100.00%	0.9817
UHGV-1376246	No	18,313 bps	53.02%	100.00%	0.9816
UHGV-1376249	No	18,300 bps	53.05%	100.00%	0.9819
UHGV-0194077	No	18,246 bps	53.38%	100.00%	0.9815
UHGV-0268531	No	18,169 bps	52.84%	100.00%	0.9820
UHGV-1374549	No	18,147 bps	53.19%	100.00%	0.9828
UHGV-0297514	No	18,120 bps	53.16%	100.00%	0.9828
UHGV-0130589	No	18,019 bps	53.30%	100.00%	0.9828
UHGV-0240096	No	17,847 bps	52.87%	100.00%	0.9823
UHGV-0232849	No	17,793 bps	52.83%	100.00%	0.9820
UHGV-0364037	No	18,399 bps	52.99%	99.90%	0.9812
UHGV-0403961	No	18,046 bps	53.08%	99.90%	0.9818
UHGV-0390100	No	18,016 bps	52.75%	99.90%	0.9816
UHGV-1434398	No	17,843 bps	52.88%	99.32%	0.9821
UHGV-1387308	No	11,828 bps	53.38%	65.84%	0.9804
UHGV-1426210	No	9,542 bps	55.29%	53.11%	0.9773