vOTU-002459

Overview

vOTU representative UHGV-2047326

No. of genomes 6

Genome length 45,292 bps

Completeness 100.00% (complete)

Host Agathobaculum butyriciproducens

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-002459
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00118 › vGENUS-00683 › vSUBGEN-43353 › vOTU-002459
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Butyricicoccaceae › Agathobaculum › Agathobaculum butyriciproducens
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2047326
BioSample	SAMEA2737819
Genome length	45,292 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	73
CDS density	89.64%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2047326_1	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2047326_1	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-2047326_1	UniRef90	UniRef90_A0A417HW04	M23 family peptidase	NA
UHGV-2047326_1	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-2047326_1	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2047326_1	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2047326_2	KOfam	K14059	int; integrase	NA
UHGV-2047326_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2047326_2	UniRef90	UniRef90_A0A417HS27	Site-specific integrase	NA
UHGV-2047326_2	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2047326_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2047326_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2047326_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2047326_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2047326_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2047326_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2047326_5	UniRef90	UniRef90_A0A417HS32	XRE family transcriptional regulator	NA
UHGV-2047326_5	eggNOG-mapper	445972.ANACOL_00135	Helix-turn-helix XRE-family like proteins	NA
UHGV-2047326_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2047326_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2047326_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2047326_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2047326_6	UniRef90	UniRef90_A0A417HS19	XRE family transcriptional regulator	NA
UHGV-2047326_6	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-2047326_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2047326_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2047326_7	Structural annotation	COG3311	NA	NA
UHGV-2047326_12	Structural annotation	PF08962	NA	NA
UHGV-2047326_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2047326_14	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-2047326_14	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-2047326_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2047326_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2047326_15	PHROG	phrog_14970	NA	unknown function
UHGV-2047326_15	UniRef90	UniRef90_UPI00046EF232	Rad52/Rad22 family DNA repair protein	NA
UHGV-2047326_15	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-2047326_15	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-2047326_15	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2047326_15	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2047326_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2047326_16	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-2047326_16	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2047326_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2047326_17	eggNOG-mapper	397290.C810_01737	NA	NA
UHGV-2047326_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2047326_18	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2047326_18	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-2047326_18	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-2047326_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2047326_19	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2047326_19	UniRef90	UniRef90_A0A417H726	HNH endonuclease	NA
UHGV-2047326_19	eggNOG-mapper	521000.PROVRETT_05968	HNH endonuclease	NA
UHGV-2047326_19	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-2047326_19	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2047326_19	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-2047326_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2047326_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2047326_20	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-2047326_20	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-2047326_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2047326_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2047326_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2047326_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2047326_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2047326_21	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2047326_21	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-2047326_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2047326_21	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-2047326_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2047326_22	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2047326_22	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2047326_22	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2047326_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2047326_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2047326_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2047326_23	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2047326_23	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-2047326_23	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-2047326_23	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2047326_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2047326_23	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2047326_25	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-2047326_25	Pfam	PF04448	NA	DUF551
UHGV-2047326_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2047326_26	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-2047326_26	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-2047326_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2047326_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2047326_26	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-2047326_27	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-2047326_28	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2047326_28	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-2047326_28	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2047326_28	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2047326_28	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2047326_28	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2047326_29	PHROG	phrog_22543	NA	unknown function
UHGV-2047326_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2047326_30	UniRef90	UniRef90_A0A3A9EQ73	Restriction alleviation protein, Lar family	NA
UHGV-2047326_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2047326_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2047326_30	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2047326_32	PHROG	phrog_474	phosphofructokinase	other
UHGV-2047326_32	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-2047326_32	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-2047326_32	Pfam	PF19905	NA	DUF6378
UHGV-2047326_32	Structural annotation	PF19905	NA	NA
UHGV-2047326_34	PHROG	phrog_419	NA	unknown function
UHGV-2047326_34	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-2047326_34	Structural annotation	PF14083	NA	NA
UHGV-2047326_36	PHROG	phrog_7839	NA	unknown function
UHGV-2047326_36	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-2047326_36	Structural annotation	PF08860	NA	NA
UHGV-2047326_38	PHROG	phrog_25385	NA	unknown function
UHGV-2047326_38	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-2047326_40	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2047326_41	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-2047326_41	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-2047326_46	PHROG	phrog_13890	NA	unknown function
UHGV-2047326_46	UniRef90	UniRef90_A0A845MW17	Arc family DNA-binding protein	NA
UHGV-2047326_46	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-2047326_46	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-2047326_46	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-2047326_47	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2047326_47	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2047326_47	UniRef90	UniRef90_A0A2V2FED9	Terminase small subunit	NA
UHGV-2047326_47	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-2047326_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2047326_47	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2047326_47	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2047326_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2047326_48	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2047326_48	UniRef90	UniRef90_A0A417HVY4	PBSX family phage terminase large subunit	NA
UHGV-2047326_48	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-2047326_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2047326_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2047326_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-2047326_48	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2047326_49	PHROG	phrog_156	portal protein	head and packaging
UHGV-2047326_49	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-2047326_49	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-2047326_52	PHROG	phrog_35275	NA	unknown function
UHGV-2047326_52	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-2047326_53	PHROG	phrog_24113	NA	unknown function
UHGV-2047326_53	Structural annotation	PF11133, COG5471	NA	NA
UHGV-2047326_54	PHROG	phrog_371	major head protein	head and packaging
UHGV-2047326_54	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-2047326_54	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-2047326_54	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-2047326_54	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2047326_55	PHROG	phrog_13046	NA	unknown function
UHGV-2047326_55	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-2047326_55	Structural annotation	PF20387	NA	NA
UHGV-2047326_56	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2047326_56	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-2047326_56	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-2047326_57	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-2047326_57	PHROG	phrog_819	tail protein	tail
UHGV-2047326_57	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2047326_57	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2047326_57	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2047326_58	PHROG	phrog_24451	NA	unknown function
UHGV-2047326_58	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-2047326_59	PHROG	phrog_2310	NA	unknown function
UHGV-2047326_61	PHROG	phrog_1863	NA	unknown function
UHGV-2047326_61	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2047326_61	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-2047326_62	PHROG	phrog_297	holin	lysis
UHGV-2047326_62	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-2047326_62	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-2047326_62	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2047326_62	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2047326_62	COG	COG5546	NA	NA
UHGV-2047326_62	Structural annotation	COG5546	NA	NA
UHGV-2047326_63	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2047326_63	UniRef90	UniRef90_A0A3A9J0H5	NA	NA
UHGV-2047326_63	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2047326_63	Pfam	PF14359	NA	DUF4406
UHGV-2047326_63	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2047326_64	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2047326_64	PHROG	phrog_670	endolysin	lysis
UHGV-2047326_64	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2047326_64	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-2047326_64	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2047326_64	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2047326_64	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2047326_65	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-2047326_67	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-2047326_68	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-2047326_69	PHROG	phrog_16490	NA	unknown function
UHGV-2047326_69	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2047326_70	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-2047326_71	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-2047326_73	eggNOG-mapper	588581.Cpap_1541	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2047326	Yes	45,292 bps	52.94%	100.00%	0.9807
UHGV-0185723	No	45,292 bps	52.94%	100.00%	0.9794
UHGV-1282443	No	45,285 bps	52.94%	100.00%	0.9811
UHGV-0084727	No	51,406 bps	52.20%	99.90%	0.9807
UHGV-1435571	No	51,406 bps	52.20%	99.90%	0.9807
UHGV-1454951	No	43,992 bps	52.96%	98.17%	0.9809